Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.7e-39 163.7 78 100.0
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.5e-34 147.1 78 91.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.5e-34 147.1 78 89.7
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.7e-27 125.6 78 80.8
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 5.7e-23 110.5 77 64.9
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.9e-22 107.5 77 64.9
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.5e-18 95.9 78 61.5
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 2.3e-16 88.6 79 53.2
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 6.8e-16 87.0 77 53.2
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 8.9e-16 86.7 77 51.9
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 2.2e-14 82.0 72 48.6
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.1e-13 79.7 73 46.6
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.8e-13 79.0 79 48.1
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.8e-13 79.0 73 47.9
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.2e-13 78.2 73 50.7
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.2e-13 78.2 51 62.7
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.2e-13 78.2 74 47.3
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 3.2e-13 78.2 68 52.9
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 4.1e-13 77.8 78 51.3
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 4.1e-13 77.8 77 50.6
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 4.1e-13 77.8 77 50.6
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 7.0e-13 77.0 70 48.6
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.2e-12 76.3 73 50.7
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.6e-12 75.9 68 48.5
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 2.0e-12 75.5 78 51.3
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.0e-12 75.5 76 52.6
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.0e-12 75.5 71 52.1
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.0e-12 75.5 76 52.6
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 2.0e-12 75.5 69 56.5
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 2.7e-12 75.1 80 51.2
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 2.7e-12 75.1 80 51.2
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.7e-12 75.1 72 48.6
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 3.5e-12 74.7 77 50.6
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 4.6e-12 74.3 72 51.4
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 5.9e-12 73.9 73 53.4
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 7.8e-12 73.6 77 42.9
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.0e-11 73.2 73 47.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.3e-11 72.8 73 53.4
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.3e-11 72.8 79 50.6
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.3e-11 72.8 68 50.0
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.7e-11 72.4 77 50.6
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.7e-11 72.4 58 56.9
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.7e-11 72.4 47 63.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 2.3e-11 72.0 73 52.1
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.3e-11 72.0 77 46.8
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 2.9e-11 71.6 75 45.3
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 3.9e-11 71.2 73 53.4
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 5.0e-11 70.9 74 47.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 5.0e-11 70.9 69 50.7
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 6.6e-11 70.5 78 46.2
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 8.6e-11 70.1 80 45.0
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 8.6e-11 70.1 49 59.2
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 8.6e-11 70.1 77 44.2
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 8.6e-11 70.1 77 44.2
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 8.6e-11 70.1 78 46.2
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.1e-10 69.7 62 56.5
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-10 69.7 75 52.0
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-10 68.9 72 44.4
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 2.5e-10 68.6 77 40.3
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 2.5e-10 68.6 65 52.3
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-10 68.6 73 41.1
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 3.3e-10 68.2 72 44.4
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 3.3e-10 68.2 73 43.8
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 4.3e-10 67.8 76 48.7
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 5.6e-10 67.4 72 43.1
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 7.3e-10 67.0 69 43.5
Cc08_g06900 Coffea canephora HOM05D013878 ORTHO05D007342 7.3e-10 67.0 84 42.9
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.3e-10 67.0 79 45.6
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.5e-10 66.6 70 47.1
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.5e-10 66.6 70 47.1
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 9.5e-10 66.6 77 51.9
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 9.5e-10 66.6 68 54.4
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 9.5e-10 66.6 79 45.6
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.2e-09 66.2 85 42.4
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.2e-09 66.2 80 45.0
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.6e-09 64.7 69 42.0
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 3.6e-09 64.7 73 46.6
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 3.6e-09 64.7 67 47.8
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.6e-09 64.7 70 41.4
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.7e-09 64.3 79 44.3
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 6.2e-09 63.9 81 38.3
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 8.0e-09 63.5 68 52.9
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 8.0e-09 63.5 49 57.1
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.0e-08 63.2 75 40.0
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.4e-08 62.8 72 41.7
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.4e-08 62.8 72 41.7
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.4e-08 62.8 72 41.7
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.8e-08 62.4 72 41.7
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 2.3e-08 62.0 80 45.0
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.3e-08 62.0 50 52.0
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 2.3e-08 62.0 72 43.1
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 4.0e-08 61.2 67 47.8
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.2e-08 60.8 46 58.7
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 6.8e-08 60.5 79 40.5
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 6.8e-08 60.5 71 39.4
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 8.9e-08 60.1 73 41.1
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 2.6e-07 58.5 74 37.8
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 2.6e-07 58.5 71 43.7
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 7.5e-07 57.0 74 43.2
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 1.3e-06 56.2 65 47.7
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.3e-06 56.2 49 49.0
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.7e-06 55.8 75 41.3
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 3.7e-06 54.7 65 41.5
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 6.4e-06 53.9 49 46.9
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 8.3e-06 53.5 44 52.3


User provided reference genes

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