Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048801 Camellia sinensis var. sinensis HOM05D008047 ORTHO05D009832 7.2e-53 210.7 139 100.0
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 4.3e-21 105.1 68 75.0
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 2.1e-20 102.8 69 66.7
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 4.0e-19 98.6 69 63.8
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 4.0e-19 98.6 70 62.9
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 5.2e-19 98.2 68 69.1
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 6.8e-19 97.8 69 60.9
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 6.8e-19 97.8 69 60.9
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 8.9e-19 97.4 69 60.9
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 8.9e-19 97.4 68 66.2
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 2.0e-18 96.3 68 64.7
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 3.4e-18 95.5 69 62.3
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 4.4e-18 95.1 68 67.6
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 5.8e-18 94.7 67 65.7
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 5.8e-18 94.7 67 65.7
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 5.8e-18 94.7 67 65.7
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 5.8e-18 94.7 67 65.7
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 5.8e-18 94.7 73 56.2
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 9.9e-18 94.0 73 57.5
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.3e-17 93.6 67 65.7
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 1.3e-17 93.6 73 60.3
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 1.3e-17 93.6 66 65.2
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 1.7e-17 93.2 68 64.7
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 2.9e-17 92.4 68 63.2
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 2.9e-17 92.4 73 60.3
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 2.9e-17 92.4 73 60.3
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 3.8e-17 92.0 71 63.4
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 6.4e-17 91.3 68 63.2
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 6.4e-17 91.3 68 60.3
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 6.4e-17 91.3 68 61.8
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 6.4e-17 91.3 69 62.3
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 8.4e-17 90.9 69 59.4
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 8.4e-17 90.9 67 64.2
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 8.4e-17 90.9 69 58.0
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 1.4e-16 90.1 71 54.9
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 2.4e-16 89.4 72 58.3
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 2.4e-16 89.4 69 60.9
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 3.2e-16 89.0 74 60.8
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 5.4e-16 88.2 73 61.6
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 5.4e-16 88.2 73 61.6
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 7.1e-16 87.8 68 60.3
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 7.1e-16 87.8 67 58.2
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 9.3e-16 87.4 69 56.5
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 1.6e-15 86.7 67 61.2
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 2.1e-15 86.3 66 59.1
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 2.1e-15 86.3 73 60.3
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 2.1e-15 86.3 69 56.5
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 2.1e-15 86.3 69 55.1
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 2.7e-15 85.9 68 60.3
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 3.5e-15 85.5 73 58.9
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 6.0e-15 84.7 68 57.4
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 6.0e-15 84.7 68 54.4
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 7.8e-15 84.3 68 58.8
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 1.0e-14 84.0 68 60.3
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 1.3e-14 83.6 74 56.8
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 1.3e-14 83.6 74 56.8
CANSAT64G2909 Cannabis sativa HOM05D008047 ORTHO05D009832 1.3e-14 83.6 74 48.6
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 1.3e-14 83.6 68 57.4
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 1.7e-14 83.2 68 57.4
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 1.7e-14 83.2 68 54.4
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 2.3e-14 82.8 80 53.8
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 3.0e-14 82.4 73 56.2
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 3.9e-14 82.0 73 56.2
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 3.9e-14 82.0 68 52.9
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 5.1e-14 81.6 69 55.1
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 5.1e-14 81.6 67 56.7
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 5.1e-14 81.6 66 54.5
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 6.6e-14 81.3 73 56.2
Potri.013G131500 Populus trichocarpa HOM05D008047 ORTHO05D009832 6.6e-14 81.3 68 57.4
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 1.9e-13 79.7 68 52.9
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 1.9e-13 79.7 67 55.2
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 4.3e-13 78.6 73 54.8
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 9.6e-13 77.4 68 52.9
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.6e-12 76.6 73 53.4
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 3.6e-12 75.5 80 46.2
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 6.2e-12 74.7 69 53.6
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 6.2e-12 74.7 69 53.6
Sabra13G0111000 Salix brachista HOM05D008047 ORTHO05D009832 6.2e-12 74.7 68 51.5
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 8.1e-12 74.3 66 53.0
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 3.1e-11 72.4 67 53.7
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 5.3e-11 71.6 68 48.5
C09p63200 Brassica napus HOM05D008047 ORTHO05D009832 9.9e-10 67.4 46 65.2
PSO478G1745 Papaver somniferum HOM05D008047 ORTHO05D009832 9.9e-10 67.4 49 65.3
PSO017G1597 Papaver somniferum HOM05D008047 ORTHO05D009832 6.4e-09 64.7 49 61.2
SEGI_06211 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 6.4e-09 64.7 68 42.6
PGR042G3218 Punica granatum HOM05D001858 ORTHO05D001838 1.1e-08 63.9 70 41.4
TAR629G0091 Trochodendron aralioides HOM05D001858 ORTHO05D001838 1.9e-08 63.2 73 38.4
Rhsim10G0211900 Rhododendron simsii HOM05D001858 ORTHO05D001838 2.4e-08 62.8 74 40.5
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 4.2e-08 62.0 55 50.9
TAR629G2117 Trochodendron aralioides HOM05D001858 ORTHO05D001838 4.2e-08 62.0 73 37.0
MBI12_g20401_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 5.4e-08 61.6 67 40.3
SalBow3G4242 Salvia bowleyana HOM05D008047 ORTHO05D009832 5.4e-08 61.6 66 40.9
TAR636G2404 Trochodendron aralioides HOM05D001858 ORTHO05D001838 5.4e-08 61.6 73 37.0
PGR142G1223 Punica granatum HOM05D008047 ORTHO05D009832 9.3e-08 60.8 65 47.7
Cc08_g13090 Coffea canephora HOM05D001858 ORTHO05D001838 3.5e-07 58.9 73 39.7
SMO146G0132 Selaginella moellendorffii HOM05D000489 ORTHO05D000372 3.5e-07 58.9 66 48.5
SEGI_26014 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 3.5e-07 58.9 67 41.8
SGA_v2.0_scaffold122G33226 Striga asiatica HOM05D008047 ORTHO05D009832 4.6e-07 58.5 68 48.5
Hund09506 Selenicereus undatus HOM05D000489 ORTHO05D000372 6.0e-07 58.2 76 43.4
HPP92_006122 Vanilla planifolia HOM05D000489 ORTHO05D000372 6.0e-07 58.2 75 41.3
AUR62007456 Chenopodium quinoa HOM05D001858 ORTHO05D001838 7.9e-07 57.8 67 43.3
SEGI_10227 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 7.9e-07 57.8 77 39.0
AUR62032324 Chenopodium quinoa HOM05D000489 ORTHO05D000372 1.3e-06 57.0 70 41.4
SEGI_28568 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 1.3e-06 57.0 68 38.2
AUR62041369 Chenopodium quinoa HOM05D000489 ORTHO05D000372 1.7e-06 56.6 75 37.3
AUR62043701 Chenopodium quinoa HOM05D000489 ORTHO05D000372 1.7e-06 56.6 75 37.3
Medtr1g071730 Medicago truncatula HOM05D000489 ORTHO05D000372 1.7e-06 56.6 74 40.5
Sc07g0009400 Simmondsia chinensis HOM05D001858 ORTHO05D001838 1.7e-06 56.6 67 41.8
AUR62026966 Chenopodium quinoa HOM05D000489 ORTHO05D000372 2.3e-06 56.2 75 37.3
AUR62027276 Chenopodium quinoa HOM05D001858 ORTHO05D001838 2.3e-06 56.2 67 41.8
COL.COLO4_11868 Corchorus olitorius HOM05D000489 ORTHO05D000372 2.3e-06 56.2 71 40.8
MD11G1282300 Malus domestica HOM05D000489 ORTHO05D000372 2.3e-06 56.2 72 41.7
Ah.11g050440 Amaranthus hybridus HOM05D000489 ORTHO05D000372 3.0e-06 55.8 77 37.7
AUR62028597 Chenopodium quinoa HOM05D003852 ORTHO05D003095 3.0e-06 55.8 70 40.0
Duzib133G0364 Durio zibethinus HOM05D000489 ORTHO05D000372 3.0e-06 55.8 70 41.4
PGR031G3039 Punica granatum HOM05D001858 ORTHO05D001838 3.0e-06 55.8 85 32.9
Thecc.01G274900 Theobroma cacao HOM05D000489 ORTHO05D000372 3.0e-06 55.8 71 39.4
Nn6g34115 Nelumbo nucifera HOM05D000489 ORTHO05D000372 3.9e-06 55.5 73 41.1
Dinv21585 Davidia involucrata HOM05D001858 ORTHO05D001838 5.1e-06 55.1 69 36.2
FAN20G0305 Fragaria x ananassa HOM05D000489 ORTHO05D000372 5.1e-06 55.1 71 40.8
Nn6g34114 Nelumbo nucifera HOM05D000489 ORTHO05D000372 5.1e-06 55.1 73 39.7
Ca_09742_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 6.6e-06 54.7 74 40.5
Ciclev10006599m.g Citrus clementina HOM05D000489 ORTHO05D000372 6.6e-06 54.7 77 33.8
PSO478G1109 Papaver somniferum HOM05D001858 ORTHO05D001838 6.6e-06 54.7 71 38.0
VMungo1383G0717 Vigna mungo HOM05D000489 ORTHO05D000372 6.6e-06 54.7 71 39.4
arahy.Tifrunner.gnm1.ann1.LF2RWL Arachis hypogaea HOM05D000489 ORTHO05D000372 8.7e-06 54.3 69 42.0
FvH4_2g23211 Fragaria vesca HOM05D000489 ORTHO05D000372 8.7e-06 54.3 71 38.0
FAN24G1682 Fragaria x ananassa HOM05D000489 ORTHO05D000372 8.7e-06 54.3 71 38.0
Lalb_Chr16g0376501 Lupinus albus HOM05D000489 ORTHO05D000372 8.7e-06 54.3 75 34.7
Lalb_Chr16g0389531 Lupinus albus HOM05D001858 ORTHO05D001838 8.7e-06 54.3 69 36.2
Os06g0686400 Oryza sativa ssp. japonica HOM05D001858 ORTHO05D001838 8.7e-06 54.3 69 34.8
Peaxi162Scf00002g00311 Petunia axillaris HOM05D001858 ORTHO05D001838 8.7e-06 54.3 67 41.8
Rhsim13G0026800 Rhododendron simsii HOM05D000489 ORTHO05D000372 8.7e-06 54.3 75 34.7


User provided reference genes

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