Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 2.7e-77 292.4 196 100.0
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 1.2e-58 230.3 198 80.3
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 7.1e-54 214.5 201 61.2
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 8.7e-52 207.6 195 73.8
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.1e-51 207.2 203 59.1
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.1e-51 207.2 199 59.3
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 3.3e-51 205.7 206 57.8
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 5.6e-51 204.9 201 78.6
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 1.2e-50 203.8 199 77.4
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 1.6e-50 203.4 207 65.2
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 6.2e-50 201.4 210 58.1
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 1.4e-49 200.3 199 68.3
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 1.4e-49 200.3 196 59.2
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 9.0e-49 197.6 200 71.5
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 1.5e-48 196.8 199 74.4
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.5e-48 196.8 199 74.4
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 1.5e-48 196.8 199 72.4
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 2.6e-48 196.1 207 56.5
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 2.6e-48 196.1 208 56.2
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 3.4e-48 195.7 197 69.0
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.4e-48 195.7 199 64.8
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 1.7e-47 193.4 199 69.8
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 1.7e-47 193.4 198 73.7
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 2.9e-47 192.6 199 67.3
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 1.9e-46 189.9 199 65.8
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 2.4e-46 189.5 196 77.0
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 4.2e-46 188.7 200 65.5
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 5.4e-46 188.3 199 74.4
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 9.3e-46 187.6 201 69.7
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 1.6e-45 186.8 198 69.7
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 2.1e-45 186.4 198 66.2
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 2.1e-45 186.4 205 75.6
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 6.0e-45 184.9 202 66.8
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 6.0e-45 184.9 199 68.8
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 7.8e-45 184.5 204 71.1
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 1.0e-44 184.1 204 71.1
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 1.3e-44 183.7 198 69.2
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 1.3e-44 183.7 199 68.3
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 1.7e-44 183.3 198 75.8
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 3.0e-44 182.6 197 67.5
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 3.9e-44 182.2 203 66.0
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 2.5e-43 179.5 204 61.3
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 3.3e-43 179.1 204 60.3
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 3.3e-43 179.1 204 69.6
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 4.3e-43 178.7 201 67.2
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 7.3e-43 177.9 198 54.5
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 7.3e-43 177.9 198 54.5
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 7.3e-43 177.9 199 71.4
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 1.3e-42 177.2 194 53.6
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.6e-42 176.8 207 69.6
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.6e-42 176.8 206 67.5
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.6e-42 176.8 201 65.7
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.1e-42 176.4 199 70.9
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 4.8e-42 175.3 201 64.7
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 2.4e-41 172.9 215 65.1
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 2.4e-41 172.9 215 63.7
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 5.3e-41 171.8 209 65.1
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 4.5e-40 168.7 190 58.9
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 1.0e-36 157.5 207 56.5
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 3.0e-36 156.0 192 51.6
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.1e-35 154.1 200 49.5
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 8.1e-34 147.9 172 70.9
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 3.1e-33 146.0 198 48.5
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 5.3e-33 145.2 218 54.6
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 5.3e-33 145.2 199 61.8
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 6.9e-33 144.8 208 58.2
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 3.4e-32 142.5 222 52.7
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 4.5e-32 142.1 216 44.9
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 7.6e-32 141.4 221 54.3
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 7.6e-32 141.4 218 48.6
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 1.3e-31 140.6 216 44.4
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.7e-31 140.2 199 52.3
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.7e-31 140.2 175 65.1
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 2.2e-31 139.8 221 53.8
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 2.9e-31 139.4 200 48.5
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 1.1e-30 137.5 165 65.5
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 2.5e-30 136.3 221 59.7
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 5.5e-30 135.2 223 46.6
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 5.5e-30 135.2 223 46.6
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 5.5e-30 135.2 223 46.6
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 1.2e-29 134.0 216 62.0
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 2.1e-29 133.3 206 61.7
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 5.1e-28 128.6 199 46.7
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 6.7e-28 128.3 221 59.7
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 6.7e-28 128.3 216 60.2
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 4.3e-27 125.6 208 59.1
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 5.6e-27 125.2 166 52.4
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 2.1e-26 123.2 219 58.4
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 1.8e-25 120.2 153 60.8
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 1.8e-25 120.2 157 61.1
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 4.5e-24 115.5 155 60.6
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 7.6e-24 114.8 211 53.1
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 7.6e-24 114.8 164 44.5
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.0e-23 114.4 164 44.5
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 6.5e-23 111.7 155 63.2
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 1.4e-22 110.5 180 57.2
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 1.0e-20 104.4 93 63.4
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.0e-20 104.4 161 70.2
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 1.3e-18 97.4 163 49.7
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 1.3e-18 97.4 188 60.1
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 3.7e-18 95.9 199 49.2
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 2.4e-17 93.2 181 52.5
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 2.4e-17 93.2 97 59.8
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 1.5e-16 90.5 94 60.6
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 7.2e-14 81.6 85 60.0
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 7.9e-13 78.2 63 71.4
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 8.8e-12 74.7 156 35.9
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 5.7e-11 72.0 155 47.1
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 9.7e-11 71.2 127 39.4
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 2.8e-10 69.7 62 71.0
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 6.3e-10 68.6 170 35.9
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 2.4e-09 66.6 190 53.2
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 2.4e-09 66.6 194 34.5
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 9.1e-09 64.7 205 41.5
Haze_13383 Corylus avellana HOM05D006794 ORTHO05D008322 4.5e-08 62.4 82 48.8
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 1.0e-07 61.2 144 37.5
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 2.2e-07 60.1 181 34.8
VMungo0251G0268 Vigna mungo HOM05D006794 ORTHO05D008322 1.1e-06 57.8 57 54.4
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.4e-06 57.4 159 32.1
VMungo1127G0591 Vigna mungo HOM05D001475 ORTHO05D001525 1.4e-06 57.4 57 54.4
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.9e-06 57.0 177 30.5
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.9e-06 57.0 35 77.1
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.9e-06 57.0 156 30.1
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 2.5e-06 56.6 35 82.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 3.2e-06 56.2 159 32.1
ATR0564G523 Amborella trichopoda HOM05D006794 ORTHO05D008322 4.2e-06 55.8 177 40.7
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 4.2e-06 55.8 36 75.0
VMungo0331G1645 Vigna mungo HOM05D006794 ORTHO05D008322 4.2e-06 55.8 57 52.6
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.5e-06 55.5 35 77.1
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 5.5e-06 55.5 36 72.2
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 5.5e-06 55.5 35 80.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 5.5e-06 55.5 35 80.0
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 7.2e-06 55.1 35 80.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 7.2e-06 55.1 35 80.0
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 7.2e-06 55.1 35 77.1
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 7.2e-06 55.1 35 80.0
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 9.4e-06 54.7 35 77.1
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 9.4e-06 54.7 171 32.2


User provided reference genes

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