Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.6e-163 579.3 290 100.0
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.5e-132 476.5 285 85.6
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.1e-123 446.0 287 80.5
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.6e-121 439.1 278 79.5
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 3.4e-121 438.7 316 73.1
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 5.8e-121 438.0 277 80.1
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.1e-119 433.7 277 79.1
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.0e-117 425.6 293 75.4
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.1e-117 424.9 256 82.0
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 2.5e-116 422.5 288 73.3
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.5e-116 422.5 278 77.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.8e-115 419.1 256 80.9
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 2.8e-115 419.1 276 76.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 2.8e-115 419.1 276 76.4
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 2.8e-115 419.1 248 84.3
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 4.8e-115 418.3 317 70.3
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.1e-114 417.2 287 77.4
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.1e-114 417.2 294 74.5
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-114 416.4 259 81.1
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 4.0e-114 415.2 271 78.2
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.3e-114 414.8 288 75.0
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 6.9e-114 414.5 269 78.1
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 6.9e-114 414.5 284 74.3
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 6.9e-114 414.5 292 72.9
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.2e-113 413.7 291 73.2
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.2e-113 413.7 277 75.8
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.6e-113 412.5 295 72.2
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.6e-113 412.5 295 73.2
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.6e-113 412.5 294 74.1
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.4e-113 412.1 295 72.9
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 4.5e-113 411.8 276 74.6
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.8e-113 411.4 275 76.4
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 7.6e-113 411.0 290 72.8
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.9e-112 409.1 286 73.1
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.8e-112 408.7 288 73.3
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 6.5e-112 407.9 281 76.2
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 8.4e-112 407.5 288 75.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.4e-111 406.8 283 74.2
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.2e-111 405.2 296 69.3
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.2e-111 405.2 261 76.6
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 5.5e-111 404.8 296 69.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 5.5e-111 404.8 296 69.6
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 5.5e-111 404.8 289 71.6
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 7.1e-111 404.4 276 74.6
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 9.3e-111 404.1 286 72.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-110 403.3 283 70.7
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.7e-110 402.5 284 70.4
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.7e-110 402.5 284 70.4
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 3.5e-110 402.1 289 73.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.0e-109 400.6 289 73.0
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-109 400.2 283 70.3
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.3e-109 400.2 283 70.3
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.3e-109 400.2 276 74.3
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 3.0e-109 399.1 289 71.6
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 3.0e-109 399.1 286 73.4
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.9e-109 398.7 274 72.6
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 3.9e-109 398.7 280 71.8
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 3.9e-109 398.7 276 73.9
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.9e-109 398.7 276 73.9
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 5.1e-109 398.3 274 73.7
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.7e-109 397.9 293 72.0
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 8.7e-109 397.5 274 72.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 8.7e-109 397.5 297 69.0
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-108 397.1 262 74.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.1e-108 397.1 272 75.7
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.5e-108 396.7 295 69.8
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.5e-108 396.7 276 73.6
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-108 396.4 274 73.4
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.5e-108 396.0 277 70.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.5e-108 396.0 274 73.0
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 7.4e-108 394.4 282 69.1
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 7.4e-108 394.4 280 70.4
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-107 393.3 276 70.7
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.6e-107 393.3 276 70.7
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.1e-107 392.9 276 71.4
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 2.8e-107 392.5 269 71.4
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 3.7e-107 392.1 289 69.9
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 6.3e-107 391.3 278 70.5
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 8.2e-107 391.0 286 70.3
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.2e-107 391.0 276 71.7
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.4e-106 390.2 271 72.3
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.8e-106 389.8 286 69.2
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.1e-106 389.0 273 70.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 5.3e-106 388.3 273 70.3
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 5.3e-106 388.3 264 72.7
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 6.9e-106 387.9 267 70.8
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.0e-105 386.3 307 68.1
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.4e-105 385.6 302 68.5
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.9e-105 384.8 296 68.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.9e-104 382.5 268 68.3
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 6.5e-104 381.3 268 67.9
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.1e-103 380.6 290 67.9
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.9e-103 379.8 288 70.5
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 4.2e-103 378.6 296 68.9
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 7.2e-103 377.9 270 71.9
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 2.3e-101 372.9 293 68.3
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.0e-101 372.5 280 67.1
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 5.1e-101 371.7 261 73.6
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 5.1e-101 371.7 261 73.6
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 7.4e-100 367.9 268 70.9
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.3e-99 367.1 289 66.4
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 2.2e-99 366.3 287 66.9
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.8e-99 365.9 254 73.2
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 4.8e-99 365.2 235 73.6
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.4e-98 363.6 277 68.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 5.9e-97 358.2 271 69.4
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 7.7e-97 357.8 235 74.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.2e-96 356.3 256 73.0
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.9e-95 353.2 274 66.1
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.9e-95 353.2 280 65.4
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 5.1e-93 345.1 252 72.2
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 9.7e-92 340.9 291 63.9
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 3.7e-91 339.0 272 64.0
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 6.9e-90 334.7 256 67.2
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 3.0e-85 319.3 262 63.4
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 7.4e-84 314.7 252 61.1
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.8e-83 312.8 294 58.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 8.2e-83 311.2 259 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 4.1e-82 308.9 269 59.9
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 4.2e-79 298.9 260 57.3
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.0e-77 292.4 283 53.7
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.0e-76 290.0 274 56.6
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.0e-74 281.6 194 73.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.7e-73 279.6 254 55.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 5.9e-73 278.5 176 79.0
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.8e-72 275.8 196 73.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.1e-71 274.2 295 51.2
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.2e-71 272.7 286 53.8
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 5.4e-66 255.4 142 86.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 8.0e-62 241.5 213 56.8
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.8e-61 240.4 142 80.3
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 3.0e-61 239.6 142 79.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 5.7e-60 235.3 205 56.6
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.8e-56 222.6 182 65.4
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.1e-54 216.9 160 71.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.8e-53 213.8 127 82.7
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-50 203.8 275 43.3
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.3e-48 196.8 114 85.1
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.3e-47 193.0 222 50.5
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 9.5e-47 191.4 137 70.8
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.2e-42 176.4 242 45.9
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 9.8e-36 154.8 239 40.6
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 7.1e-34 148.7 270 38.5
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.3e-29 133.7 129 53.5
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 8.9e-29 131.7 84 73.8
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-27 127.9 108 62.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.6e-25 120.9 82 67.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 3.9e-24 116.3 86 64.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 2.5e-23 113.6 177 38.4
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 5.6e-23 112.5 145 47.6
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-21 108.2 58 84.5
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 4.0e-21 106.3 72 72.2
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-18 97.8 84 59.5
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 3.2e-18 96.7 267 28.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.6e-17 94.4 62 67.7
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.3e-16 91.3 154 31.8
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 2.3e-16 90.5 168 33.9
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.9e-15 87.4 50 84.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.6e-14 84.3 167 28.1
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 8.1e-14 82.0 142 31.0
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 6.4e-11 72.4 257 26.8
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 7.1e-10 68.9 156 30.8
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 2.1e-09 67.4 136 37.5
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 2.5e-07 60.5 134 34.3
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 7.4e-07 58.9 40 70.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 7.4e-07 58.9 40 70.0
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 2.1e-06 57.4 184 25.0
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 4.8e-06 56.2 165 24.8
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 4.8e-06 56.2 214 22.4


User provided reference genes

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