Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.6e-59 231.9 119 100.0
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 2.3e-31 139.0 110 68.2
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.2e-24 116.7 101 63.4
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 1.0e-23 113.6 96 63.5
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 4.5e-19 98.2 96 57.3
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.8e-18 95.1 112 50.9
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.0e-15 87.0 107 48.6
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 5.7e-14 81.3 98 46.9
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 9.7e-14 80.5 110 45.5
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 1.4e-12 76.6 110 46.4
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.1e-12 75.1 118 39.0
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 2.0e-11 72.8 105 50.5
Actinidia24046 Actinidia chinensis HOM05D001601 ORTHO05D006936 2.6e-11 72.4 53 71.7
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 5.9e-11 71.2 103 40.8
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 1.0e-10 70.5 108 40.7
Oeu050577.1 Olea europaea HOM05D012748 ORTHO05D003871 2.2e-10 69.3 108 45.4
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 3.8e-10 68.6 108 41.7
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 5.0e-10 68.2 124 38.7
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.4e-09 66.6 64 53.1
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.9e-09 66.2 40 72.5
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.2e-09 65.5 60 51.7
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.2e-09 65.5 42 66.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.2e-09 65.5 42 66.7
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 3.2e-09 65.5 63 52.4
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 3.2e-09 65.5 46 65.2
Manes.17G030800 Manihot esculenta HOM05D012748 ORTHO05D014783 4.2e-09 65.1 73 49.3
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 4.2e-09 65.1 40 67.5
Rhsim02G0116800 Rhododendron simsii HOM05D007156 ORTHO05D003871 4.2e-09 65.1 58 62.1
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 7.2e-09 64.3 44 68.2
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.2e-08 63.5 47 55.3
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.6e-08 63.2 41 65.9
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 2.1e-08 62.8 123 34.1
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.6e-08 62.0 112 36.6
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 3.6e-08 62.0 43 62.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.1e-08 61.2 111 33.3
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.1e-08 61.2 111 33.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 6.1e-08 61.2 39 66.7
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 6.1e-08 61.2 58 50.0
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 7.9e-08 60.8 41 65.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 7.9e-08 60.8 109 35.8
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 1.0e-07 60.5 108 38.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.0e-07 60.5 116 37.1
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.0e-07 60.5 110 31.8
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.0e-07 60.5 63 47.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.4e-07 60.1 55 47.3
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.8e-07 59.7 110 38.2
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.8e-07 59.7 47 55.3
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.8e-07 59.7 37 67.6
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.8e-07 59.7 37 67.6
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.8e-07 59.7 37 67.6
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 2.3e-07 59.3 112 37.5
Ah.14g088550 Amaranthus hybridus HOM05D012748 ORTHO05D014783 2.3e-07 59.3 113 38.1
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.3e-07 59.3 37 64.9
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 3.0e-07 58.9 103 37.9
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.0e-07 58.9 115 34.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 3.0e-07 58.9 59 49.2
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 3.0e-07 58.9 71 43.7
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 3.9e-07 58.5 105 38.1
AUR62014641 Chenopodium quinoa HOM05D012748 ORTHO05D014783 3.9e-07 58.5 106 42.5
AUR62044053 Chenopodium quinoa HOM05D012748 ORTHO05D014783 3.9e-07 58.5 106 42.5
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.9e-07 58.5 60 46.7
EL10As6g23655 Beta vulgaris HOM05D012748 ORTHO05D014783 5.1e-07 58.2 109 45.0
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 5.1e-07 58.2 56 51.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 6.7e-07 57.8 41 65.9
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 6.7e-07 57.8 115 37.4
Sc17g0006870 Simmondsia chinensis HOM05D012748 ORTHO05D014783 6.7e-07 57.8 61 55.7
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 6.7e-07 57.8 41 65.9
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 8.8e-07 57.4 69 46.4
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 8.8e-07 57.4 39 64.1
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 8.8e-07 57.4 114 34.2
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 8.8e-07 57.4 114 34.2
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 8.8e-07 57.4 76 40.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 8.8e-07 57.4 98 33.7
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 8.8e-07 57.4 116 37.1
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 8.8e-07 57.4 60 45.0
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.1e-06 57.0 112 36.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.1e-06 57.0 65 47.7
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.1e-06 57.0 65 47.7
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.1e-06 57.0 117 33.3
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.1e-06 57.0 60 50.0
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 1.1e-06 57.0 59 45.8
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.5e-06 56.6 66 53.0
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.5e-06 56.6 42 57.1
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 2.0e-06 56.2 41 58.5
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.0e-06 56.2 108 35.2
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.0e-06 56.2 73 42.5
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 2.0e-06 56.2 53 50.9
HPP92_022326 Vanilla planifolia HOM05D066303 ORTHO05D051580 2.0e-06 56.2 66 47.0
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 2.6e-06 55.8 64 48.4
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 3.3e-06 55.5 109 36.7
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 3.3e-06 55.5 36 66.7
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.3e-06 55.5 37 70.3
PGR004G0170 Punica granatum HOM05D012748 ORTHO05D014783 3.3e-06 55.5 69 46.4
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 4.4e-06 55.1 42 54.8
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 4.4e-06 55.1 44 56.8
COL.COLO4_31669 Corchorus olitorius HOM05D007156 ORTHO05D014783 4.4e-06 55.1 46 54.3
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 4.4e-06 55.1 66 50.0
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 4.4e-06 55.1 57 49.1
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 5.7e-06 54.7 88 34.1
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 5.7e-06 54.7 51 47.1
ECA236G2635 Erigeron canadensis HOM05D062241 ORTHO05D045200 7.4e-06 54.3 110 37.3
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 7.4e-06 54.3 125 36.0
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 7.4e-06 54.3 71 45.1
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 9.7e-06 53.9 57 47.4
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.7e-06 53.9 57 47.4
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.7e-06 53.9 57 47.4
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.7e-06 53.9 57 47.4
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.7e-06 53.9 57 47.4
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 9.7e-06 53.9 39 56.4


User provided reference genes

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