Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 1.8e-90 335.9 163 100.0
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.1e-35 152.9 165 52.1
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 9.8e-33 144.1 155 53.5
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 9.1e-31 137.5 162 50.6
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.5e-30 135.2 165 47.3
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 7.7e-30 134.4 162 49.4
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.7e-29 133.3 168 45.8
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 5.0e-29 131.7 160 48.1
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 2.5e-28 129.4 167 49.7
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.2e-28 127.9 144 52.1
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-27 127.1 155 46.5
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.6e-27 125.6 167 46.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 6.1e-27 124.8 154 48.7
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 3.0e-26 122.5 153 48.4
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 4.0e-26 122.1 180 43.3
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 4.0e-26 122.1 150 48.7
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.9e-26 120.9 180 42.8
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.2e-25 120.6 179 43.0
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.2e-25 120.6 170 42.9
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 1.2e-25 120.6 177 42.4
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.5e-25 120.2 165 46.7
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.5e-25 120.2 159 47.8
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-25 119.4 163 44.2
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-25 119.4 163 44.2
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.5e-25 117.9 179 43.0
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.5e-25 117.9 147 48.3
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.3e-24 117.1 153 48.4
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.7e-24 116.7 147 47.6
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.2e-24 116.3 161 46.0
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.8e-24 115.9 178 42.7
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.8e-24 115.9 165 41.2
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.7e-24 115.5 163 41.7
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 3.7e-24 115.5 163 39.9
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.4e-23 112.8 163 43.6
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.2e-23 112.5 163 42.9
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 4.1e-23 112.1 167 40.7
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.6e-22 110.2 118 54.2
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.6e-22 110.2 166 44.6
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 2.0e-22 109.8 153 43.8
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.9e-22 108.2 164 42.1
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 5.9e-22 108.2 165 42.4
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 5.9e-22 108.2 159 37.7
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 5.9e-22 108.2 153 43.1
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 7.8e-22 107.8 152 42.8
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.0e-21 107.5 156 45.5
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 1.3e-21 107.1 161 42.9
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-20 104.0 155 44.5
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-20 103.6 145 40.0
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.3e-20 102.1 155 45.2
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 5.6e-20 101.7 138 47.1
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 5.6e-20 101.7 158 38.6
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.1e-19 99.8 146 44.5
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.1e-19 99.8 145 39.3
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.1e-19 99.8 152 43.4
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.8e-19 99.4 144 38.2
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 3.6e-19 99.0 148 39.9
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 4.7e-19 98.6 168 42.3
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.7e-19 98.6 143 40.6
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 1.0e-18 97.4 148 42.6
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.4e-18 97.1 164 36.0
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.0e-18 95.5 151 41.7
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.0e-18 95.5 143 40.6
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.0e-18 95.5 143 40.6
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 5.2e-18 95.1 148 43.9
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 6.8e-18 94.7 139 41.0
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 8.9e-18 94.4 152 42.1
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.0e-17 93.2 136 43.4
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 2.0e-17 93.2 154 42.9
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.6e-17 92.8 127 46.5
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 4.4e-17 92.0 147 37.4
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 5.8e-17 91.7 178 35.4
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 7.5e-17 91.3 152 40.8
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-16 90.5 158 38.0
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.3e-16 90.5 114 47.4
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.9e-16 89.4 143 37.1
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.7e-16 89.0 100 47.0
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.7e-16 89.0 152 39.5
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 8.3e-16 87.8 144 39.6
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 1.1e-15 87.4 161 37.9
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 1.1e-15 87.4 153 39.2
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.4e-15 87.0 160 40.0
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.4e-15 86.3 120 43.3
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.2e-15 85.9 167 40.1
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 3.2e-15 85.9 174 39.1
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.6e-14 83.6 155 38.1
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 4.6e-14 82.0 140 37.9
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 6.0e-14 81.6 164 38.4
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 7.8e-14 81.3 101 45.5
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.0e-13 80.9 148 37.2
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.0e-13 80.9 156 37.2
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.0e-13 80.9 146 37.7
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.3e-13 80.5 151 38.4
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.7e-13 80.1 167 33.5
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.3e-13 79.7 136 39.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 2.3e-13 79.7 137 38.7
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 3.0e-13 79.3 148 39.2
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 3.9e-13 79.0 140 41.4
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 3.9e-13 79.0 159 37.7
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 5.0e-13 78.6 145 38.6
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 6.6e-13 78.2 137 39.4
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 6.6e-13 78.2 157 36.9
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 6.6e-13 78.2 151 37.1
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.9e-12 76.6 169 38.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.5e-12 76.3 140 40.7
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.3e-12 75.9 144 37.5
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.3e-12 75.9 153 36.6
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.6e-12 75.1 144 38.9
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 5.6e-12 75.1 138 39.1
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.3e-12 74.7 144 38.2
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 7.3e-12 74.7 142 38.0
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 9.5e-12 74.3 146 38.4
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 2.8e-11 72.8 153 36.6
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.7e-11 72.0 138 37.7
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 6.2e-11 71.6 173 30.6
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 8.0e-11 71.2 98 43.9
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.1e-10 70.9 116 42.2
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.8e-10 70.1 158 34.8
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-10 69.7 153 37.3
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 3.1e-10 69.3 102 43.1
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 4.0e-10 68.9 99 44.4
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 6.8e-10 68.2 163 35.6
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.9e-10 67.8 145 35.9
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 1.5e-09 67.0 145 31.7
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.5e-09 67.0 152 32.9
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.5e-09 67.0 136 33.8
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 1.5e-09 67.0 144 34.0
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 2.0e-09 66.6 158 34.2
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.6e-09 66.2 99 43.4
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 5.8e-09 65.1 136 34.6
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 7.5e-09 64.7 96 42.7
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-08 63.9 136 33.1
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.7e-08 62.4 128 36.7
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.9e-08 62.0 131 34.4
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 4.9e-08 62.0 147 32.7
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 6.4e-08 61.6 157 31.8
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 8.3e-08 61.2 129 35.7
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 1.1e-07 60.8 141 35.5
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.9e-07 60.1 154 31.2
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 9.2e-07 57.8 146 32.9
Sopen02g036650 Solanum pennellii HOM05D061607 ORTHO05D005146 9.2e-07 57.8 100 41.0
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-06 57.4 87 39.1
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 2.1e-06 56.6 146 36.3
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 2.7e-06 56.2 147 32.0
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.7e-06 56.2 182 30.2


User provided reference genes

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