Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.6e-60 234.2 128 100.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.9e-42 174.1 128 80.5
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 8.5e-40 167.2 141 68.8
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 3.3e-36 155.2 138 65.9
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 5.7e-36 154.5 138 61.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.2e-35 152.5 138 62.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.2e-35 152.5 138 65.2
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 3.7e-35 151.8 138 65.2
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 4.8e-35 151.4 138 65.2
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 6.3e-35 151.0 137 64.2
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.1e-34 150.2 138 63.8
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.1e-34 150.2 138 64.5
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.4e-34 149.1 135 63.7
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-34 148.7 138 63.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 5.3e-34 147.9 138 62.3
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 9.1e-34 147.1 138 61.6
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.2e-33 146.7 137 62.8
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.2e-33 146.7 138 62.3
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.2e-33 146.7 138 61.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.5e-33 146.4 138 63.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-33 146.0 138 63.8
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.4e-33 145.2 124 66.1
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.4e-33 145.2 138 62.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 3.4e-33 145.2 138 61.6
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 3.4e-33 145.2 138 60.9
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 3.4e-33 145.2 138 60.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.4e-33 145.2 141 58.2
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 3.4e-33 145.2 138 61.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.5e-33 144.8 138 60.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.5e-33 144.8 138 61.6
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.9e-33 144.4 124 66.1
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 5.9e-33 144.4 138 62.3
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.7e-33 144.1 138 63.0
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 7.7e-33 144.1 138 63.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 7.7e-33 144.1 138 60.9
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.0e-32 143.7 138 61.6
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.7e-32 142.9 138 60.9
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.2e-32 142.5 146 57.5
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.9e-32 142.1 138 60.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 3.8e-32 141.7 138 57.2
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.8e-32 141.7 138 60.9
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 5.0e-32 141.4 138 61.6
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 6.5e-32 141.0 135 61.5
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 6.5e-32 141.0 138 60.9
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 6.5e-32 141.0 141 58.9
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 8.5e-32 140.6 138 60.1
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 8.5e-32 140.6 138 59.4
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.9e-31 139.4 119 65.5
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.9e-31 139.4 138 58.7
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.9e-31 139.4 138 58.7
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.5e-31 139.0 138 58.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.2e-31 138.7 138 60.1
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.2e-30 136.7 138 58.0
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.6e-30 136.3 137 59.9
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.6e-30 135.2 138 58.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 3.6e-30 135.2 138 57.2
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 3.6e-30 135.2 135 59.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.7e-30 134.8 140 58.6
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.7e-30 134.8 140 58.6
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 6.1e-30 134.4 138 58.0
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 6.1e-30 134.4 136 56.6
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 7.9e-30 134.0 141 53.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 7.9e-30 134.0 138 58.0
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.0e-29 133.7 138 57.2
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.8e-29 132.9 138 57.2
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 3.0e-29 132.1 138 57.2
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 5.1e-29 131.3 138 56.5
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 5.1e-29 131.3 138 60.1
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 6.7e-29 131.0 132 57.6
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.1e-28 130.2 138 55.1
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.1e-28 130.2 138 58.0
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.3e-27 126.7 138 55.1
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.7e-27 126.3 137 56.2
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.7e-27 126.3 138 56.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.2e-27 125.9 137 55.5
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.7e-27 125.2 139 52.5
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.1e-26 120.6 129 59.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 9.1e-26 120.6 129 59.7
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-25 119.8 129 58.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-25 119.4 119 59.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.6e-25 119.0 129 59.7
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.0e-24 117.1 119 58.8
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 2.2e-24 115.9 138 50.7
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.0e-24 114.8 125 54.4
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.1e-23 113.6 134 56.7
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.5e-23 111.3 118 56.8
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 9.4e-23 110.5 135 50.4
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.6e-22 109.8 135 50.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.7e-22 109.0 118 56.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 8.0e-22 107.5 110 59.1
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 8.0e-22 107.5 110 59.1
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.4e-21 106.7 109 57.8
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.8e-21 106.3 138 47.8
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-21 105.9 109 58.7
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-21 105.9 109 58.7
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-21 105.9 109 58.7
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-21 105.9 109 58.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 4.0e-21 105.1 112 56.2
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.5e-20 103.2 132 52.3
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 3.3e-20 102.1 135 47.4
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 5.7e-20 101.3 132 53.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 9.7e-20 100.5 111 55.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.3e-19 100.1 135 45.9
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.3e-19 100.1 135 45.9
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.3e-19 100.1 135 46.7
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.7e-19 99.8 135 45.9
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.7e-19 99.8 135 45.9
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.7e-19 99.8 135 45.9
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.7e-19 99.8 135 45.9
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.7e-19 99.8 135 45.9
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.2e-19 99.4 138 43.5
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 2.8e-19 99.0 135 45.9
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 3.7e-19 98.6 135 46.7
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.1e-18 97.1 135 45.2
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.6e-17 93.2 132 49.2
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 3.8e-16 88.6 78 61.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.9e-15 86.3 68 69.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 7.2e-15 84.3 109 48.6
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 8.0e-14 80.9 135 38.5
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 4.0e-13 78.6 89 58.4
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.4e-12 75.1 72 61.1
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 5.7e-12 74.7 57 70.2
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 8.3e-11 70.9 62 66.1
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 9.1e-10 67.4 121 41.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-09 66.2 102 41.2
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.9e-09 64.7 102 43.1
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.3e-08 63.5 67 59.7
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-07 60.1 57 61.4


User provided reference genes

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