Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 0.0e+00 1262.3 661 100.0
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 0.0e+00 1196.8 661 95.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.6e-294 1015.0 667 81.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 3.0e-290 1001.5 667 79.5
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.8e-287 992.3 663 80.5
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.1e-279 964.9 652 79.3
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 3.6e-275 951.4 663 76.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 7.2e-260 900.6 664 70.9
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.7e-254 882.1 624 73.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 4.5e-254 881.3 669 68.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.9e-252 875.9 654 70.3
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.2e-251 873.2 680 69.3
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 8.0e-251 870.5 658 69.5
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.3e-250 869.0 652 69.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.0e-250 868.6 652 69.9
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.5e-249 866.3 656 70.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.5e-249 866.3 653 70.3
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 8.3e-248 860.5 650 69.4
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 5.9e-246 854.4 659 69.3
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 2.3e-245 852.4 653 69.2
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.9e-245 851.7 652 68.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 6.6e-245 850.9 654 69.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 4.3e-244 848.2 649 69.6
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.6e-243 846.3 656 68.6
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.1e-243 845.9 646 69.7
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.1e-243 845.9 655 67.8
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 8.0e-243 844.0 667 67.8
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 8.0e-243 844.0 656 68.3
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.2e-242 841.3 676 68.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-240 836.6 646 69.2
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.3e-240 836.6 699 64.7
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.2e-240 835.9 664 67.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.7e-240 835.1 702 64.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.9e-239 832.8 658 67.5
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.2e-239 832.0 660 66.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.6e-238 829.7 677 67.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.5e-238 828.6 640 69.2
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.9e-237 825.1 655 66.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 3.9e-237 825.1 649 67.8
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 5.0e-237 824.7 667 67.0
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.5e-236 822.4 632 69.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 4.3e-236 821.6 713 64.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 2.1e-235 819.3 656 66.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.8e-235 818.9 673 65.1
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.6e-233 812.4 661 64.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.6e-233 812.4 661 66.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 4.4e-233 811.6 661 64.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.9e-232 808.9 655 65.3
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 4.9e-232 808.1 675 65.3
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 8.3e-232 807.4 652 65.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 8.3e-232 807.4 650 65.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 5.4e-231 804.7 661 66.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.1e-231 804.3 632 68.4
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-230 803.5 652 65.0
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.6e-230 801.6 652 64.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 4.6e-230 801.6 650 65.2
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 6.0e-230 801.2 652 64.6
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.3e-229 800.0 652 64.6
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.1e-228 797.0 658 64.4
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.5e-228 795.8 645 65.7
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.2e-227 793.5 661 64.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.6e-227 793.1 652 64.0
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 6.8e-226 787.7 649 63.6
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 8.9e-226 787.3 659 63.9
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.2e-225 786.9 653 63.6
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.0e-225 786.2 649 63.8
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.6e-225 785.8 658 63.7
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.3e-224 783.5 646 63.6
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 7.1e-223 777.7 662 62.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.7e-222 775.8 651 62.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 6.0e-222 774.6 658 61.9
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.0e-221 773.9 657 61.9
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.3e-221 772.7 661 62.0
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.9e-221 771.9 651 61.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.9e-221 771.9 657 61.6
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-220 770.0 649 62.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.3e-220 768.8 649 61.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 5.6e-220 768.1 649 61.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 9.6e-220 767.3 649 62.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 8.1e-219 764.2 649 61.9
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 8.1e-219 764.2 649 61.9
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 8.9e-218 760.8 682 59.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 9.9e-217 757.3 651 61.3
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 2.2e-216 756.1 625 64.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.4e-216 754.6 587 66.3
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 5.4e-215 751.5 654 60.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 9.3e-215 750.7 646 61.9
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-214 750.0 683 61.6
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 6.6e-213 744.6 639 61.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 6.6e-213 744.6 639 61.7
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 8.7e-213 744.2 541 71.5
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.9e-212 743.0 537 71.1
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.3e-212 741.1 652 61.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.1e-210 737.3 662 60.7
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-209 732.6 652 62.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 9.9e-209 730.7 662 60.4
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.2e-207 725.7 573 68.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.1e-206 723.0 658 57.8
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.5e-206 722.2 581 67.6
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 9.6e-196 687.6 657 59.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.4e-194 682.9 565 66.5
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.5e-193 680.2 587 64.1
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.0e-189 666.0 516 67.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 5.7e-188 661.8 661 56.3
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.8e-187 659.4 537 63.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.9e-181 639.0 530 62.5
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.7e-176 623.6 646 52.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.5e-175 618.6 659 50.8
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 7.4e-172 608.2 656 50.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.4e-167 594.0 660 50.0
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.0e-161 573.5 399 74.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 4.4e-156 555.8 654 47.7
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 4.8e-147 525.8 397 73.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 7.0e-146 521.9 653 47.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.7e-144 517.3 431 64.0
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 4.2e-143 512.7 635 46.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.0e-141 506.1 656 45.3
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.2e-140 504.6 656 44.8
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 3.5e-137 493.0 658 42.7
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-127 460.7 373 63.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-103 381.3 250 78.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.3e-94 351.7 296 63.9
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-88 331.6 611 38.1
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 6.7e-80 302.8 429 42.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.7e-73 280.8 258 59.3
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.3e-72 278.5 438 41.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.8e-70 270.8 213 69.5
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-68 264.6 383 45.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 8.2e-62 242.7 612 33.5
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.7e-57 227.6 202 63.4
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.1e-53 214.2 308 44.2
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-51 208.4 306 45.1
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.2e-51 208.0 236 54.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-50 204.9 244 48.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 3.3e-47 194.1 201 54.7
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.9e-42 178.3 175 53.1
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.1e-41 174.9 256 42.6
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.7e-41 173.7 133 66.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 7.7e-36 156.4 107 73.8
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.5e-35 152.9 119 72.3
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.8e-32 145.2 621 26.1
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-31 142.5 186 46.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 5.7e-31 140.2 97 67.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 7.2e-26 123.2 96 63.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.7e-22 112.1 132 50.0
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-22 111.3 134 50.0
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-21 108.6 132 50.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 4.5e-20 104.0 141 46.8
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.9e-18 98.6 86 58.1
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.9e-18 98.6 75 68.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.5e-18 98.2 78 62.8
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-15 87.8 69 63.8
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.7e-15 87.0 67 65.7
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-13 81.6 71 56.3
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.0e-11 74.7 67 59.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 8.6e-11 73.2 68 50.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.3e-10 71.2 64 56.2
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 9.5e-10 69.7 52 63.5
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.8e-09 68.2 74 51.4
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 3.6e-09 67.8 68 47.1
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.1e-08 66.2 161 29.8
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 8.9e-08 63.2 94 46.8
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 5.8e-07 60.5 53 66.0
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.7e-06 58.9 55 47.3


User provided reference genes

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