Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.7e-151 539.3 272 100.0
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 2.0e-123 446.0 232 97.0
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 2.6e-123 445.7 254 87.8
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 1.9e-121 439.5 253 85.8
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 7.1e-121 437.6 254 85.0
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 6.0e-120 434.5 275 80.7
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 1.4e-116 423.3 272 78.3
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 3.1e-116 422.2 274 78.1
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 3.4e-115 418.7 255 81.2
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 7.6e-115 417.5 254 79.9
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 3.8e-114 415.2 274 76.6
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 8.4e-114 414.1 255 80.0
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 8.4e-114 414.1 254 82.7
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 1.4e-113 413.3 281 74.0
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 9.3e-113 410.6 255 79.2
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.6e-112 409.8 261 77.8
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 2.1e-112 409.5 252 79.8
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 6.1e-112 407.9 254 78.7
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 1.3e-111 406.8 254 78.0
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 5.1e-111 404.8 261 75.9
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 1.1e-110 403.7 280 73.6
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 1.5e-110 403.3 254 77.2
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 3.3e-110 402.1 254 77.6
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 4.3e-110 401.7 254 78.0
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 9.7e-110 400.6 265 75.5
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.6e-109 399.8 255 78.0
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 1.4e-108 396.7 271 72.7
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 2.4e-108 396.0 256 75.8
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 4.1e-108 395.2 262 74.4
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 4.1e-108 395.2 258 76.7
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 4.1e-108 395.2 254 77.6
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 6.9e-108 394.4 261 74.3
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 2.0e-107 392.9 256 75.8
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 2.0e-107 392.9 256 76.2
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 5.9e-107 391.3 259 74.9
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 7.7e-107 391.0 285 70.9
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 7.7e-107 391.0 256 76.6
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.3e-106 390.2 254 76.4
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 1.7e-106 389.8 257 75.9
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.7e-106 389.8 255 76.5
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 2.2e-106 389.4 254 75.2
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 3.8e-106 388.7 253 75.9
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 5.0e-106 388.3 247 78.1
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 1.1e-105 387.1 222 86.0
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 5.5e-105 384.8 245 75.5
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 7.2e-105 384.4 254 75.2
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 9.4e-105 384.0 255 74.9
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 1.6e-104 383.3 256 75.8
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.6e-104 383.3 256 75.4
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 2.1e-104 382.9 235 79.6
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 2.1e-104 382.9 256 75.8
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 2.7e-104 382.5 274 72.3
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.6e-104 382.1 255 74.5
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 6.1e-104 381.3 254 74.8
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 7.9e-104 380.9 254 73.2
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.3e-103 379.4 256 74.6
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 3.0e-103 379.0 255 74.1
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 8.8e-103 377.5 287 67.2
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 2.0e-102 376.3 227 81.9
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 2.5e-102 375.9 258 73.3
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 9.7e-102 374.0 260 72.7
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 2.8e-101 372.5 263 69.6
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 3.7e-101 372.1 267 71.5
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 3.7e-101 372.1 260 70.4
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 3.7e-101 372.1 260 70.0
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 1.1e-100 370.5 254 72.4
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 1.8e-100 369.8 254 72.0
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 2.4e-100 369.4 263 68.8
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 5.3e-100 368.2 254 72.0
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 1.2e-99 367.1 222 81.1
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 1.5e-99 366.7 252 72.6
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 7.7e-99 364.4 222 79.7
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 1.0e-98 364.0 254 72.8
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 1.3e-98 363.6 251 70.9
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 5.0e-98 361.7 254 70.9
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 6.5e-98 361.3 254 70.9
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 6.5e-98 361.3 254 70.9
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 6.5e-98 361.3 254 70.9
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 6.5e-98 361.3 256 70.7
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 1.1e-97 360.5 254 71.7
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 1.1e-97 360.5 238 73.5
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 3.2e-97 359.0 255 70.6
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 5.5e-97 358.2 254 70.1
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 1.2e-96 357.1 276 65.2
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 1.6e-96 356.7 257 69.3
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 2.7e-96 355.9 226 76.5
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 6.1e-96 354.8 236 76.7
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 1.8e-95 353.2 255 68.2
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 2.2e-93 346.3 252 70.2
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 4.1e-92 342.0 259 68.0
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 4.5e-91 338.6 240 70.4
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.0e-90 337.4 221 75.1
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.0e-90 337.4 221 75.1
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 8.5e-90 334.3 221 75.1
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 8.8e-87 324.3 179 89.4
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 8.8e-87 324.3 255 67.5
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 4.4e-86 322.0 287 61.3
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 2.2e-85 319.7 221 71.9
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 2.2e-82 309.7 259 62.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 6.5e-82 308.1 259 61.8
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.4e-76 290.4 225 66.2
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.8e-74 282.3 248 54.8
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 1.5e-73 280.4 249 58.6
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 6.1e-72 275.0 229 61.1
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 4.9e-69 265.4 238 55.0
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.6e-64 249.2 211 57.3
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 5.2e-63 245.4 267 49.8
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 5.4e-60 235.3 148 79.1
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.1e-57 227.6 196 60.2
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 2.0e-51 206.8 243 47.3
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 5.8e-30 135.6 224 37.5
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 6.6e-26 122.1 122 55.7
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 6.6e-26 122.1 85 72.9
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 1.8e-18 97.4 249 30.1
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 9.0e-15 85.1 62 64.5
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 9.0e-15 85.1 62 64.5
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 5.5e-12 75.9 227 29.1
Rhsim07G0184600 Rhododendron simsii HOM05D035565 ORTHO05D339362 3.1e-07 60.1 45 66.7


User provided reference genes

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