Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 8.8e-119 430.3 209 100.0
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 4.0e-95 351.7 182 91.8
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 7.5e-94 347.4 182 90.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 2.4e-92 342.4 182 87.4
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 3.1e-92 342.0 182 85.7
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 9.1e-92 340.5 182 87.4
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 9.1e-92 340.5 182 87.4
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.2e-91 340.1 182 87.4
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.2e-91 340.1 182 87.9
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 2.0e-91 339.3 182 86.3
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.7
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.7
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.7
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.7
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.2
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.2
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 7.7e-91 337.4 182 85.2
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.3e-90 336.7 181 85.6
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.7e-90 336.3 181 86.7
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.7e-90 336.3 182 84.1
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 2.2e-90 335.9 182 85.2
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.9e-90 335.5 182 86.8
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 5.0e-90 334.7 182 84.6
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 6.5e-90 334.3 182 85.2
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 6.5e-90 334.3 182 84.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 8.5e-90 334.0 182 84.1
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.1e-89 333.6 182 84.6
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 1.1e-89 333.6 181 85.6
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.1e-89 333.6 181 85.6
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.5e-89 333.2 182 85.7
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.5e-89 333.2 182 84.1
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.2e-89 332.0 182 85.2
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 3.2e-89 332.0 182 85.7
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 3.2e-89 332.0 178 87.6
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 4.2e-89 331.6 182 82.4
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.2e-89 331.6 182 85.2
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 4.2e-89 331.6 182 84.6
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 5.5e-89 331.3 182 83.5
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 5.5e-89 331.3 182 83.5
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 7.2e-89 330.9 182 84.1
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 7.2e-89 330.9 181 84.5
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 7.2e-89 330.9 182 84.6
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 7.2e-89 330.9 182 84.1
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 7.2e-89 330.9 181 84.0
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 9.4e-89 330.5 181 84.0
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.2e-88 330.1 182 84.1
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.6e-88 329.7 182 84.6
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.6e-88 329.7 182 83.0
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 2.1e-88 329.3 182 85.2
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.1e-88 329.3 182 84.1
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.1e-88 329.3 182 84.1
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.7e-88 328.9 181 84.0
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 3.6e-88 328.6 182 82.4
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.6e-88 328.6 182 84.1
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.6e-88 328.6 182 84.6
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 4.7e-88 328.2 182 85.2
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 4.7e-88 328.2 182 81.9
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.7e-88 328.2 182 84.1
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 4.7e-88 328.2 182 84.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 4.7e-88 328.2 182 84.6
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 6.1e-88 327.8 182 84.6
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 8.0e-88 327.4 181 84.5
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 8.0e-88 327.4 182 84.1
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.0e-87 327.0 182 83.5
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.4e-87 326.6 174 87.9
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.4e-87 326.6 182 82.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.8e-87 326.2 186 80.1
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.3e-87 325.9 182 84.1
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 2.3e-87 325.9 181 82.9
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 3.0e-87 325.5 182 83.0
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 4.0e-87 325.1 181 81.8
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 4.0e-87 325.1 180 81.1
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.0e-87 325.1 182 83.0
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 4.0e-87 325.1 182 83.5
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 4.0e-87 325.1 182 83.0
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 6.8e-87 324.3 182 80.8
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.2e-86 323.6 180 80.6
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.2e-86 323.6 180 80.6
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.5e-86 323.2 180 80.0
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.0e-86 322.8 180 80.6
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 2.6e-86 322.4 180 81.1
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.4e-86 322.0 180 80.0
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.4e-86 322.0 182 83.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 4.4e-86 321.6 180 80.6
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.3e-85 320.1 180 80.0
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.8e-85 318.9 182 80.2
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 2.8e-85 318.9 182 81.9
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 2.8e-85 318.9 180 81.1
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 3.7e-85 318.5 180 78.3
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 3.7e-85 318.5 180 78.3
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 3.7e-85 318.5 180 78.3
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 8.3e-85 317.4 180 77.8
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-84 317.0 180 77.8
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.1e-84 317.0 182 79.7
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.8e-84 316.2 172 85.5
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 2.4e-84 315.8 180 77.8
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.1e-84 315.5 182 79.1
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 9.1e-84 313.9 180 78.3
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 9.1e-84 313.9 180 78.3
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.0e-82 310.5 182 80.2
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 1.3e-82 310.1 185 78.9
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 3.8e-82 308.5 182 74.2
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.2e-81 305.1 182 78.0
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 5.5e-81 304.7 180 77.8
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 9.5e-81 303.9 182 77.5
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 8.0e-80 300.8 181 79.6
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 8.0e-80 300.8 186 74.7
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.5e-78 296.6 186 73.7
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 7.5e-78 294.3 181 76.2
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 9.8e-78 293.9 181 75.1
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 1.7e-77 293.1 181 75.1
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 6.3e-77 291.2 181 75.1
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 7.0e-76 287.7 181 73.5
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 7.0e-76 287.7 181 72.9
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 9.2e-76 287.3 180 73.9
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 9.2e-76 287.3 182 72.5
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 4.5e-75 285.0 181 72.4
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 7.8e-75 284.3 181 72.4
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.0e-74 283.9 173 74.0
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 4.9e-69 265.0 181 67.4
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.5e-62 243.4 180 57.2
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 4.3e-57 225.3 181 54.7
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 7.3e-57 224.6 197 51.3
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.8e-55 219.9 172 62.8
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.0e-55 218.8 187 52.9
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.2e-53 213.0 196 49.5
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 7.1e-52 208.0 175 53.1
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.1e-44 184.1 168 51.8
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 2.4e-39 166.4 88 90.9
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 9.0e-39 164.5 180 44.4
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 6.2e-32 141.7 172 44.2
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 3.0e-26 122.9 88 63.6
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 2.8e-24 116.3 154 39.0
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 1.9e-20 103.6 54 87.0
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.4e-07 60.8 88 36.4


User provided reference genes

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