Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.0e-219 763.8 378 100.0
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.0e-219 763.8 378 100.0
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 5.9e-182 641.0 345 89.3
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 7.7e-182 640.6 377 82.0
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.3e-181 639.8 378 81.5
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.9e-181 638.6 378 81.7
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 1.1e-180 636.7 375 81.9
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.5e-180 635.6 375 82.7
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 5.5e-180 634.4 369 84.3
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 4.7e-179 631.3 375 81.1
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.0e-178 630.2 376 81.1
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.0e-178 630.2 376 80.9
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 2.3e-178 629.0 367 81.7
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 5.2e-178 627.9 374 81.3
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 6.8e-178 627.5 375 81.3
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 6.8e-178 627.5 347 86.5
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.2e-177 626.7 375 80.8
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.5e-177 626.3 378 79.6
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 2.6e-177 625.5 377 80.9
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 2.6e-177 625.5 376 80.3
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 3.4e-177 625.2 459 69.3
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 2.2e-176 622.5 347 85.3
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 4.8e-176 621.3 376 80.3
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 4.8e-176 621.3 481 66.9
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 8.3e-176 620.5 343 86.6
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.1e-175 620.2 378 79.1
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.8e-175 619.4 375 78.4
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.4e-175 619.0 374 78.6
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 5.4e-175 617.8 376 78.5
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.7e-174 615.5 356 82.3
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.0e-173 613.6 374 77.5
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.3e-173 613.2 344 84.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.7e-173 612.8 343 84.8
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 2.2e-173 612.5 395 75.9
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 3.8e-173 611.7 347 83.3
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 6.5e-173 610.9 346 82.7
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 8.5e-173 610.5 370 78.9
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 8.5e-173 610.5 376 78.2
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 3.2e-172 608.6 374 77.3
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 5.5e-172 607.8 347 83.3
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 7.2e-172 607.4 380 78.2
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 7.2e-172 607.4 393 75.8
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 9.4e-172 607.1 363 80.7
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 9.4e-172 607.1 344 84.3
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.1e-171 605.9 347 83.3
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 3.6e-171 605.1 356 81.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 3.6e-171 605.1 348 84.5
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.0e-170 603.6 370 78.1
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 1.4e-170 603.2 374 77.5
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.8e-170 602.8 375 77.3
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 4.0e-170 601.7 374 76.5
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 8.8e-170 600.5 379 77.3
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.2e-169 600.1 363 78.5
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.2e-169 600.1 364 78.8
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.0e-169 599.4 344 82.6
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 2.0e-169 599.4 379 76.8
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.0e-169 599.4 345 82.9
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 7.5e-169 597.4 390 76.4
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.3e-168 596.7 353 80.2
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.7e-168 596.3 361 79.5
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.7e-168 596.3 379 76.8
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 2.8e-168 595.5 375 76.8
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 3.7e-168 595.1 377 76.7
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 3.7e-168 595.1 382 76.7
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 4.9e-168 594.7 343 82.8
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.9e-168 594.7 347 82.4
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 4.9e-168 594.7 350 80.9
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.1e-167 593.6 361 78.9
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.1e-167 593.6 358 80.4
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 1.1e-167 593.6 383 74.9
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.4e-167 592.4 341 82.1
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 3.1e-167 592.0 377 75.9
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 3.1e-167 592.0 371 77.1
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.1e-167 591.7 341 82.1
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 7.0e-167 590.9 355 78.9
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.2e-166 590.1 344 81.1
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.6e-166 589.7 351 78.9
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.6e-166 589.7 349 81.1
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 2.0e-166 589.3 377 75.6
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.5e-166 588.2 411 70.8
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 5.9e-166 587.8 343 81.3
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 7.7e-166 587.4 367 76.8
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.0e-165 587.0 344 80.2
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.0e-165 587.0 343 81.3
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 1.3e-165 586.6 343 79.6
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.9e-165 585.5 341 81.5
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 8.6e-165 583.9 350 79.7
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.9e-164 582.8 341 80.9
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.5e-164 582.4 341 80.6
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 4.3e-164 581.6 358 79.3
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 5.6e-164 581.3 341 80.6
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.1e-163 579.3 341 81.2
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.8e-163 578.9 341 80.4
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 6.1e-163 577.8 386 74.9
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.8e-162 576.2 341 80.1
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 3.0e-162 575.5 337 81.0
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 2.2e-160 569.3 361 74.5
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 6.4e-160 567.8 346 77.7
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.7e-158 562.4 344 79.4
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.0e-154 550.4 345 74.2
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 2.9e-152 542.3 356 76.4
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 2.7e-150 535.8 388 68.8
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.0e-149 533.9 361 73.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 8.9e-146 520.8 304 81.2
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.5e-145 520.0 349 73.9
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.1e-140 503.8 346 70.5
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.5e-140 503.4 339 70.8
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.9e-140 503.1 339 70.5
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 2.6e-137 492.7 377 66.8
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.9e-136 489.2 393 68.7
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 5.4e-135 485.0 270 86.3
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 4.4e-129 465.3 329 66.6
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.4e-127 460.3 259 83.8
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.2e-127 458.8 380 67.4
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.6e-125 451.4 255 83.9
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.5e-124 450.3 315 73.3
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.5e-124 449.5 315 73.0
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.8e-123 445.3 408 59.1
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.2e-118 430.6 343 61.2
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.4e-111 407.1 232 81.5
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 2.5e-108 396.4 228 82.5
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 4.0e-106 389.0 353 52.1
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.8e-101 373.6 245 72.7
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.3e-96 357.5 220 79.1
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.7e-96 357.1 348 51.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 2.2e-96 356.7 346 52.0
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 5.1e-93 345.5 254 68.9
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 8.2e-91 338.2 190 84.7
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.7e-88 330.5 176 91.5
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 8.2e-75 285.0 222 67.1
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 3.5e-65 253.1 165 76.4
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 2.7e-62 243.4 156 74.4
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 4.7e-54 216.1 118 88.1
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.0e-53 214.9 345 39.7
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 1.5e-52 211.1 118 83.9
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.0e-40 171.8 248 43.5
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.9e-40 169.9 94 83.0
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.9e-39 167.5 99 80.8
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.7e-35 153.3 354 32.2
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 3.3e-23 113.6 81 67.9
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.2e-22 111.7 95 60.0
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.1e-22 110.9 171 42.7
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 2.2e-19 100.9 255 32.2
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 9.2e-18 95.5 87 55.2
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 2.0e-12 77.8 45 80.0
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.4e-10 70.9 41 78.0


User provided reference genes

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