Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.2e-195 684.9 343 100.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.1e-158 561.6 299 95.7
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-138 496.9 348 73.0
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.8e-116 423.3 385 61.0
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.4e-110 403.7 349 61.0
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.3e-108 396.4 344 64.2
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.9e-103 379.4 357 59.1
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.3e-100 369.8 356 57.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 6.7e-100 368.2 259 73.7
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.8e-97 360.1 291 62.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.2e-95 353.2 360 53.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 4.4e-91 339.0 362 53.6
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.7e-91 338.6 268 62.7
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.1e-89 334.3 361 51.5
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.3e-89 332.0 276 60.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 5.0e-87 325.5 347 52.2
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 5.5e-86 322.0 304 56.6
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-85 320.9 363 51.0
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-85 320.9 363 51.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 4.7e-85 318.9 360 51.1
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.0e-84 316.2 361 50.7
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 5.2e-84 315.5 355 52.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 8.8e-84 314.7 362 50.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.5e-83 313.9 361 50.7
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.3e-83 312.8 361 48.2
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.2e-82 310.1 358 50.3
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 3.7e-82 309.3 355 51.8
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 4.8e-82 308.9 345 49.0
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 4.8e-82 308.9 298 56.0
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 8.2e-82 308.1 270 58.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.8e-81 307.0 372 48.9
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 3.1e-81 306.2 353 49.0
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 7.0e-81 305.1 353 50.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 7.0e-81 305.1 364 48.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.2e-80 304.3 298 52.3
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.2e-80 304.3 369 48.0
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.2e-80 304.3 360 50.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.0e-80 303.5 366 48.4
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.6e-80 303.1 297 55.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 7.7e-80 301.6 355 48.5
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.3e-79 300.8 362 48.1
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.7e-79 300.4 353 49.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 5.0e-79 298.9 276 56.2
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 6.5e-79 298.5 354 49.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.5e-79 298.5 365 48.2
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.1e-78 297.7 275 56.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.1e-78 297.7 362 47.8
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.1e-78 297.7 293 57.0
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.5e-78 297.4 274 56.2
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.5e-78 297.4 368 47.3
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.9e-78 297.0 291 54.0
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.5e-78 296.6 270 56.7
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.5e-78 296.6 293 54.9
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.5e-78 296.6 293 54.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.2e-78 296.2 367 48.0
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 4.2e-78 295.8 270 56.7
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 4.2e-78 295.8 360 47.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 4.2e-78 295.8 363 46.6
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 4.2e-78 295.8 353 49.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 5.5e-78 295.4 360 48.9
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.2e-78 295.0 279 54.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 9.4e-78 294.7 360 48.6
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 9.4e-78 294.7 265 55.8
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.6e-77 293.9 268 58.2
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.1e-77 293.5 361 47.9
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.6e-77 292.7 275 56.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.1e-77 292.0 276 56.5
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 8.0e-77 291.6 287 53.0
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 8.0e-77 291.6 346 47.4
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.0e-77 291.6 359 47.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.4e-76 290.8 353 46.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.8e-76 290.4 362 46.7
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.8e-76 290.4 356 48.6
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.3e-76 290.0 354 47.7
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.0e-76 289.7 345 47.5
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 4.0e-76 289.3 358 47.8
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.2e-76 288.9 370 47.3
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 6.8e-76 288.5 361 48.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.2e-75 287.7 348 47.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.6e-75 286.6 338 49.4
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 4.4e-75 285.8 361 47.4
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 5.7e-75 285.4 274 55.1
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 7.5e-75 285.0 343 49.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 4.8e-74 282.3 271 53.5
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 6.3e-74 282.0 343 49.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.3e-74 282.0 274 54.0
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 6.3e-74 282.0 338 48.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.1e-73 281.2 348 46.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-73 280.4 388 45.1
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-73 280.4 388 45.1
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-73 280.4 392 44.9
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 3.1e-73 279.6 376 44.9
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 5.3e-73 278.9 353 47.3
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 5.3e-73 278.9 368 44.8
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.6e-72 277.3 271 53.5
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 4.5e-72 275.8 350 48.9
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.3e-71 274.2 332 47.3
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.9e-71 273.1 326 49.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.1e-70 271.2 269 55.0
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.9e-70 270.4 182 76.9
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 5.5e-70 268.9 270 55.6
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.5e-70 268.9 365 45.5
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 9.4e-70 268.1 363 43.8
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.6e-69 267.3 266 53.4
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.6e-69 267.3 270 55.2
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.1e-69 266.9 350 45.4
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.7e-69 266.5 362 44.8
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.7e-69 266.5 347 48.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.7e-69 266.5 279 52.7
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.7e-69 266.5 349 45.0
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 4.7e-69 265.8 366 43.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 8.0e-69 265.0 362 43.9
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.4e-68 264.2 279 52.3
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-68 263.8 356 44.4
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.3e-68 263.5 352 45.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.3e-68 263.5 340 47.1
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.0e-68 263.1 350 45.1
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 3.0e-68 263.1 262 57.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 4.0e-68 262.7 353 45.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 8.8e-68 261.5 359 43.7
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.4e-67 259.6 363 44.4
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.4e-67 259.6 355 44.2
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.7e-66 257.3 358 43.6
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 6.3e-66 255.4 228 56.1
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.4e-65 254.2 326 42.6
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.4e-65 253.4 272 50.0
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.4e-65 253.4 272 50.0
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.6e-64 250.8 272 49.6
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 2.0e-64 250.4 291 47.1
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.3e-63 247.7 355 42.5
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 2.9e-63 246.5 243 55.1
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.5e-62 243.4 370 41.9
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.2e-62 242.7 323 46.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.6e-61 240.7 351 44.2
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 6.1e-61 238.8 353 43.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 8.9e-60 235.0 260 49.6
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.4e-59 233.0 340 42.1
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.4e-57 226.9 327 40.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.5e-56 223.0 305 43.9
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.6e-55 218.4 357 40.9
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-54 216.5 320 44.1
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.7e-50 204.1 218 50.9
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 6.4e-50 202.2 250 44.4
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.2e-48 198.0 284 41.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-48 197.2 304 39.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.6e-48 196.1 310 38.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.7e-45 186.0 276 44.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.4e-41 173.7 269 38.3
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.4e-41 173.7 284 39.8
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 2.5e-38 163.7 213 42.3
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.1e-37 160.6 255 38.0
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.3e-36 157.1 308 36.7
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.4e-35 153.3 115 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.1e-30 138.3 450 26.0
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 5.6e-30 136.0 216 39.4
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 9.6e-30 135.2 195 42.6
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.7e-26 124.4 172 43.0
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 8.4e-26 122.1 311 29.3
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.3e-23 114.0 163 41.1
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.3e-21 108.2 103 50.5
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.1e-21 107.5 168 44.0
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 3.6e-21 106.7 105 48.6
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.9e-20 102.4 154 43.5
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.2e-19 101.7 118 47.5
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.4e-19 99.8 101 55.4
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.4e-17 94.7 110 46.4
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.6e-16 91.3 105 41.9
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 7.9e-16 89.0 81 53.1
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 5.6e-14 82.8 291 25.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.1e-13 80.9 111 37.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.8e-13 80.5 83 50.6
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.8e-13 79.7 83 49.4
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.5e-11 74.7 249 26.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 3.4e-11 73.6 186 30.1
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 2.4e-09 67.4 55 50.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 9.3e-09 65.5 56 48.2
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.6e-08 64.7 316 25.3
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 3.5e-08 63.5 40 65.0
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.0e-07 62.0 51 52.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 6.7e-07 59.3 70 45.7
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 6.7e-07 59.3 43 65.1
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 8.7e-07 58.9 47 59.6
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 4.3e-06 56.6 49 49.0


User provided reference genes

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