Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048683 Camellia sinensis var. sinensis HOM05D003323 ORTHO05D003726 1.3e-66 256.1 117 100.0
CSS0034057 Camellia sinensis var. sinensis HOM05D003323 ORTHO05D003726 4.2e-54 214.5 137 77.4
CSS0044054 Camellia sinensis var. sinensis HOM05D003323 ORTHO05D003726 5.2e-28 127.9 93 71.0
Actinidia22097 Actinidia chinensis HOM05D003323 ORTHO05D003726 1.4e-25 119.8 76 75.0
Cc00_g09510 Coffea canephora HOM05D003323 ORTHO05D003726 2.4e-25 119.0 96 64.6
Actinidia30567 Actinidia chinensis HOM05D003323 ORTHO05D003726 4.1e-25 118.2 88 67.0
Dinv14597 Davidia involucrata HOM05D003323 ORTHO05D003726 7.8e-24 114.0 75 72.0
Rhsim01G0232200 Rhododendron simsii HOM05D003323 ORTHO05D003726 3.0e-23 112.1 76 69.7
Lj1C1139T8 Lonicera japonica HOM05D003323 ORTHO05D003726 3.9e-23 111.7 76 68.4
Lsat_1_v5_gn_2_58781 Lactuca sativa HOM05D003323 ORTHO05D003726 6.6e-23 110.9 76 68.4
Oeu048439.1 Olea europaea HOM05D003323 ORTHO05D003726 6.6e-23 110.9 76 69.7
Lj1A1139G46 Lonicera japonica HOM05D003323 ORTHO05D003726 1.5e-22 109.8 76 68.4
Migut.C00699 Erythranthe guttata HOM05D003323 ORTHO05D003726 1.9e-22 109.4 76 67.1
Lalb_Chr24g0403091 Lupinus albus HOM05D003323 ORTHO05D003726 1.9e-22 109.4 76 65.8
Migut.N00506 Erythranthe guttata HOM05D003323 ORTHO05D003726 4.3e-22 108.2 76 68.4
TAR626G0517 Trochodendron aralioides HOM05D003323 ORTHO05D003726 4.3e-22 108.2 76 65.8
Aqoxy2G00016 Aquilegia oxysepala HOM05D003323 ORTHO05D003726 7.3e-22 107.5 76 65.8
Actinidia30568 Actinidia chinensis HOM05D003323 ORTHO05D003726 9.5e-22 107.1 77 66.2
SGA_v2.0_scaffold326G48704 Striga asiatica HOM05D003323 ORTHO05D003726 9.5e-22 107.1 76 65.8
VMungo1383G0739 Vigna mungo HOM05D003323 ORTHO05D003726 9.5e-22 107.1 80 63.8
MBI19_g24065_MAGBIO Magnolia biondii HOM05D003323 ORTHO05D003726 1.2e-21 106.7 81 61.7
Phvul.001G100400 Phaseolus vulgaris HOM05D003323 ORTHO05D003726 1.2e-21 106.7 76 65.8
Ciclev10021104m.g Citrus clementina HOM05D003323 ORTHO05D003726 1.6e-21 106.3 76 65.8
HanXRQChr14g0437961 Helianthus annuus HOM05D003323 ORTHO05D003726 1.6e-21 106.3 76 65.8
Prupe.7G001300 Prunus persica HOM05D003323 ORTHO05D003726 2.1e-21 105.9 76 65.8
Glyma.16G043100 Glycine max HOM05D003323 ORTHO05D003726 4.7e-21 104.8 76 64.5
Glyma.19G109000 Glycine max HOM05D003323 ORTHO05D003726 4.7e-21 104.8 76 64.5
SGA_v2.0_scaffold374G50226 Striga asiatica HOM05D003323 ORTHO05D003726 4.7e-21 104.8 96 55.2
arahy.Tifrunner.gnm1.ann1.1BJ025 Arachis hypogaea HOM05D003323 ORTHO05D003726 6.2e-21 104.4 75 66.7
arahy.Tifrunner.gnm1.ann1.P6Q6NG Arachis hypogaea HOM05D003323 ORTHO05D003726 6.2e-21 104.4 75 66.7
Sp4g21410 Schrenkiella parvula HOM05D003323 ORTHO05D003726 1.8e-20 102.8 91 56.0
Potri.013G054100 Populus trichocarpa HOM05D003323 ORTHO05D003726 2.3e-20 102.4 90 57.8
Sc18g0000450 Simmondsia chinensis HOM05D003323 ORTHO05D003726 2.3e-20 102.4 76 61.8
vmacro12580 Vaccinium macrocarpon HOM05D003323 ORTHO05D003726 2.3e-20 102.4 69 68.1
SalBow8G1550 Salvia bowleyana HOM05D003323 ORTHO05D003726 3.1e-20 102.1 81 60.5
QL07p020709 Quercus lobata HOM05D003323 ORTHO05D003726 6.8e-20 100.9 76 61.8
Sabra19G0040300 Salix brachista HOM05D003323 ORTHO05D003726 8.9e-20 100.5 88 58.0
MD12G1000900 Malus domestica HOM05D003323 ORTHO05D003726 1.2e-19 100.1 76 64.5
Haze_19396 Corylus avellana HOM05D003323 ORTHO05D003726 1.5e-19 99.8 77 62.3
Hma1.2p1_0044F.1_g026200 Hydrangea macrophylla HOM05D003323 ORTHO05D003726 2.0e-19 99.4 75 65.3
Potri.019G031500 Populus trichocarpa HOM05D003323 ORTHO05D003726 2.0e-19 99.4 88 55.7
Sabra19G0040200 Salix brachista HOM05D003323 ORTHO05D003726 2.0e-19 99.4 88 55.7
THA.LOC104805794 Tarenaya hassleriana HOM05D003323 ORTHO05D003726 2.6e-19 99.0 76 61.8
Manes.08G147900 Manihot esculenta HOM05D003323 ORTHO05D003726 3.4e-19 98.6 76 60.5
GSVIVG01033372001 Vitis vinifera HOM05D000010 ORTHO05D000151 3.4e-19 98.6 91 56.0
CARHR133820 Cardamine hirsuta HOM05D003323 ORTHO05D003726 4.4e-19 98.2 91 53.8
CiPaw.09G000100 Carya illinoinensis HOM05D003323 ORTHO05D003726 4.4e-19 98.2 76 61.8
CDE09G0895 Ceratophyllum demersum HOM05D003323 ORTHO05D003726 4.4e-19 98.2 75 64.0
HanXRQChr13g0397641 Helianthus annuus HOM05D003323 ORTHO05D003726 4.4e-19 98.2 81 54.3
HanXRQChr13g0397651 Helianthus annuus HOM05D003323 ORTHO05D003726 4.4e-19 98.2 81 54.3
Lj1g0017895 Lotus japonicus HOM05D003323 ORTHO05D003726 5.8e-19 97.8 76 57.9
Nitab4.5_0000571g0030 Nicotiana tabacum HOM05D003323 ORTHO05D003726 5.8e-19 97.8 98 55.1
Carub.0004s2111 Capsella rubella HOM05D003323 ORTHO05D003726 7.5e-19 97.4 91 54.9
Medtr7g085240 Medicago truncatula HOM05D003323 ORTHO05D003726 9.8e-19 97.1 76 59.2
Thecc.05G259200 Theobroma cacao HOM05D003323 ORTHO05D003726 9.8e-19 97.1 76 60.5
CANSAT78G0442 Cannabis sativa HOM05D003323 ORTHO05D003726 1.3e-18 96.7 91 54.9
AT2G39050 Arabidopsis thaliana HOM05D003323 ORTHO05D003726 1.7e-18 96.3 91 53.8
Gohir.1Z049450 Gossypium hirsutum HOM05D003323 ORTHO05D003726 1.7e-18 96.3 76 59.2
Gohir.1Z049550 Gossypium hirsutum HOM05D003323 ORTHO05D003726 1.7e-18 96.3 76 59.2
Gohir.A13G101900 Gossypium hirsutum HOM05D003323 ORTHO05D003726 1.7e-18 96.3 76 59.2
Os07g0683600 Oryza sativa ssp. japonica HOM05D003323 ORTHO05D003726 1.7e-18 96.3 76 57.9
CDE08G1162 Ceratophyllum demersum HOM05D003323 ORTHO05D003726 2.2e-18 95.9 78 56.4
Thhalv10016926m.g Eutrema salsugineum HOM05D003323 ORTHO05D003726 2.2e-18 95.9 91 52.7
Sabra13G0048800 Salix brachista HOM05D003323 ORTHO05D003726 2.2e-18 95.9 90 55.6
BcaB01g03645 Brassica carinata HOM05D003323 ORTHO05D003726 2.9e-18 95.5 76 57.9
A03p21850 Brassica napus HOM05D003323 ORTHO05D003726 2.9e-18 95.5 76 57.9
C03p25920 Brassica napus HOM05D003323 ORTHO05D003726 2.9e-18 95.5 76 57.9
BolC3t14977H Brassica oleracea HOM05D003323 ORTHO05D003726 2.9e-18 95.5 76 57.9
BraA03t11421Z Brassica rapa HOM05D003323 ORTHO05D003726 2.9e-18 95.5 76 57.9
Gorai.013G118100 Gossypium raimondii HOM05D003323 ORTHO05D003726 2.9e-18 95.5 76 57.9
Nitab4.5_0001364g0100 Nicotiana tabacum HOM05D003323 ORTHO05D003726 2.9e-18 95.5 98 53.1
TWI32G0068 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 3.7e-18 95.1 76 57.9
Os07g0684000 Oryza sativa ssp. japonica HOM05D003323 ORTHO05D003726 4.9e-18 94.7 76 59.2
HPP92_006680 Vanilla planifolia HOM05D003323 ORTHO05D003726 4.9e-18 94.7 76 57.9
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 4.9e-18 94.7 76 57.9
MD14G1001100 Malus domestica HOM05D003323 ORTHO05D003726 6.4e-18 94.4 75 61.3
Rhsim03G0000300 Rhododendron simsii HOM05D003323 ORTHO05D003726 6.4e-18 94.4 51 82.4
Duzib128G0950 Durio zibethinus HOM05D003323 ORTHO05D003726 8.3e-18 94.0 76 57.9
PSO210G1588 Papaver somniferum HOM05D003323 ORTHO05D003726 8.3e-18 94.0 76 56.6
Solyc01g010750.4 Solanum lycopersicum HOM05D003323 ORTHO05D003726 8.3e-18 94.0 80 58.8
HPP92_021143 Vanilla planifolia HOM05D003323 ORTHO05D003726 8.3e-18 94.0 76 59.2
Zm00001eb111670 Zea mays HOM05D003323 ORTHO05D003726 8.3e-18 94.0 76 56.6
MELO3C008791.2 Cucumis melo HOM05D003323 ORTHO05D003726 1.4e-17 93.2 91 49.5
HPP92_014362 Vanilla planifolia HOM05D003323 ORTHO05D003726 1.4e-17 93.2 76 59.2
ClCG04G005200 Citrullus lanatus HOM05D003323 ORTHO05D003726 1.9e-17 92.8 87 50.6
CAN.G700.16 Capsicum annuum HOM05D003323 ORTHO05D003726 2.4e-17 92.4 98 51.0
Zm00001eb330890 Zea mays HOM05D003323 ORTHO05D003726 4.1e-17 91.7 76 57.9
Zm00001eb330900 Zea mays HOM05D003323 ORTHO05D003726 4.1e-17 91.7 76 57.9
CsaV3_4G013410 Cucumis sativus L. HOM05D003323 ORTHO05D003726 5.4e-17 91.3 91 49.5
Os01g0104400 Oryza sativa ssp. japonica HOM05D003323 ORTHO05D003726 5.4e-17 91.3 76 56.6
Psat3g090320 Pisum sativum HOM05D003323 ORTHO05D003726 5.4e-17 91.3 76 55.3
Zm00001eb126900 Zea mays HOM05D003323 ORTHO05D003726 5.4e-17 91.3 74 60.8
Zm00001eb330880 Zea mays HOM05D003323 ORTHO05D003726 5.4e-17 91.3 76 56.6
Sed0012422 Sechium edule HOM05D003323 ORTHO05D003726 7.0e-17 90.9 76 55.3
AUR62013327 Chenopodium quinoa HOM05D003323 ORTHO05D003726 9.2e-17 90.5 90 52.2
Zm00001eb015620 Zea mays HOM05D003323 ORTHO05D003726 9.2e-17 90.5 76 56.6
AUR62011161 Chenopodium quinoa HOM05D003323 ORTHO05D003726 1.2e-16 90.1 90 51.1
Os03g0327600 Oryza sativa ssp. japonica HOM05D003323 ORTHO05D003726 1.2e-16 90.1 76 55.3
ATR0564G419 Amborella trichopoda HOM05D003323 ORTHO05D003726 1.6e-16 89.7 76 57.9
Duzib177G0467 Durio zibethinus HOM05D003323 ORTHO05D003726 1.6e-16 89.7 76 53.9
EL10Ac8g18699 Beta vulgaris HOM05D003323 ORTHO05D003726 2.1e-16 89.4 78 57.7
CDE08G0016 Ceratophyllum demersum HOM05D003323 ORTHO05D003726 2.1e-16 89.4 89 49.4
Os07g0683900 Oryza sativa ssp. japonica HOM05D003323 ORTHO05D003726 2.7e-16 89.0 76 55.3
Cpa.g.sc51.81 Carica papaya HOM05D003323 ORTHO05D003726 3.5e-16 88.6 91 51.6
PGSC0003DMG401000859 Solanum tuberosum HOM05D003323 ORTHO05D003726 3.5e-16 88.6 78 56.4
CDE09G1338 Ceratophyllum demersum HOM05D003323 ORTHO05D003726 1.0e-15 87.0 79 49.4
SMO134G0176 Selaginella moellendorffii HOM05D003323 ORTHO05D003726 1.0e-15 87.0 73 56.2
Aa31LG5G20560 Aethionema arabicum HOM05D003323 ORTHO05D003726 1.3e-15 86.7 76 51.3
Atru.chr2.1263 Acer truncatum HOM05D003323 ORTHO05D003726 2.3e-15 85.9 51 72.5
PSO339G1654 Papaver somniferum HOM05D003323 ORTHO05D003726 2.3e-15 85.9 76 55.3
Eucgr.A02073 Eucalyptus grandis HOM05D003323 ORTHO05D003726 3.0e-15 85.5 76 52.6
Lalb_Chr22g0359241 Lupinus albus HOM05D003323 ORTHO05D003726 3.0e-15 85.5 109 45.0
PGR042G2228 Punica granatum HOM05D003323 ORTHO05D003726 3.0e-15 85.5 73 54.8
Glyma.16G043000 Glycine max HOM05D003323 ORTHO05D003726 1.1e-14 83.6 76 50.0
ATR0068G033 Amborella trichopoda HOM05D003323 ORTHO05D003726 2.5e-14 82.4 77 55.8
Ca_08250_v3 Cicer arietinum L. HOM05D003323 ORTHO05D003726 2.5e-14 82.4 73 52.1
Hund26528 Selenicereus undatus HOM05D003323 ORTHO05D003726 7.3e-14 80.9 78 51.3
Peaxi162Scf00076g00717 Petunia axillaris HOM05D003323 ORTHO05D003726 1.2e-13 80.1 75 56.0
COL.COLO4_20564 Corchorus olitorius HOM05D003323 ORTHO05D003726 4.7e-13 78.2 87 44.8
ATR0048G048 Amborella trichopoda HOM05D003323 ORTHO05D003726 1.1e-12 77.0 87 44.8
SEGI_37521 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.4e-12 76.6 119 41.2
Hund09271 Selenicereus undatus HOM05D003323 ORTHO05D003726 2.3e-12 75.9 75 49.3
ECA233G2568 Erigeron canadensis HOM05D003323 ORTHO05D003726 5.2e-12 74.7 56 62.5
SEGI_20983 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 5.2e-12 74.7 121 38.8
Lsat_1_v5_gn_6_38181 Lactuca sativa HOM05D003323 ORTHO05D003726 8.9e-12 73.9 73 50.7
Lsat_1_v5_gn_6_38201 Lactuca sativa HOM05D003323 ORTHO05D003726 8.9e-12 73.9 74 52.7
SEGI_18397 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 8.9e-12 73.9 121 38.8
SEGI_27346 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 8.9e-12 73.9 121 39.7
COL.COLO4_05926 Corchorus olitorius HOM05D003323 ORTHO05D003726 1.2e-11 73.6 79 49.4
Lsat_1_v5_gn_6_38161 Lactuca sativa HOM05D003323 ORTHO05D003726 2.0e-11 72.8 61 59.0
Lsat_1_v5_gn_2_58821 Lactuca sativa HOM05D003323 ORTHO05D003726 1.3e-10 70.1 76 46.1
SEGI_11158 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.3e-10 70.1 73 47.9
Pp3c26_13000 Physcomitrium patens HOM05D003323 ORTHO05D003726 2.2e-10 69.3 73 46.6
Mapoly0011s0183 Marchantia polymorpha HOM05D003323 ORTHO05D003726 2.9e-10 68.9 70 44.3
COL.COLO4_05923 Corchorus olitorius HOM05D003323 ORTHO05D003726 4.9e-10 68.2 77 44.2
SEGI_09676 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 6.4e-10 67.8 82 42.7
SMO367G1278 Selaginella moellendorffii HOM05D003323 ORTHO05D003726 2.4e-09 65.9 71 46.5
Mapoly0083s0050 Marchantia polymorpha HOM05D003323 ORTHO05D003726 3.2e-09 65.5 63 49.2
SEGI_29386 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 5.4e-09 64.7 95 40.0
TWI34G1382 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 5.4e-09 64.7 81 39.5
TWI34G1557 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 5.4e-09 64.7 81 39.5
TWI34G1773 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 5.4e-09 64.7 81 39.5
TWI34G2035 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 5.4e-09 64.7 81 39.5
AagrBONN_evm.TU.Sc2ySwM_368.2220 Anthoceros agrestis HOM05D003323 ORTHO05D003726 1.6e-08 63.2 73 41.1
Pp3c3_10250 Physcomitrium patens HOM05D003323 ORTHO05D003726 1.6e-08 63.2 72 41.7
Pp3c13_11160 Physcomitrium patens HOM05D003323 ORTHO05D003726 2.7e-08 62.4 73 39.7
TWI60G0091 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 3.5e-08 62.0 72 43.1
CAN.G649.8 Capsicum annuum HOM05D003323 ORTHO05D003726 4.6e-08 61.6 79 39.2
AagrBONN_evm.TU.Sc2ySwM_117.2512 Anthoceros agrestis HOM05D000724 ORTHO05D000755 6.0e-08 61.2 50 54.0
SEGI_21747 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 6.0e-08 61.2 49 57.1
ECA238G1632 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-07 60.5 77 40.3
Mapoly0080s0058 Marchantia polymorpha HOM05D003323 ORTHO05D003726 1.0e-07 60.5 69 43.5
SEGI_06304 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.0e-07 60.5 74 44.6
SEGI_14009 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.3e-07 60.1 77 40.3
SEGI_25185 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.3e-07 60.1 82 40.2
SEGI_33927 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.3e-07 60.1 57 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2501 Anthoceros agrestis HOM05D003323 ORTHO05D003726 1.7e-07 59.7 81 38.3
HanXRQChr13g0416381 Helianthus annuus HOM05D003323 ORTHO05D003726 1.7e-07 59.7 82 36.6
SEGI_30613 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 2.3e-07 59.3 82 40.2
ECA238G2840 Erigeron canadensis HOM05D003323 ORTHO05D003726 3.0e-07 58.9 80 37.5
MBI05_g15359_MAGBIO Magnolia biondii HOM05D003323 ORTHO05D011598 3.0e-07 58.9 73 45.2
SMO367G1078 Selaginella moellendorffii HOM05D003323 ORTHO05D003726 3.9e-07 58.5 73 39.7
Migut.N00507 Erythranthe guttata HOM05D003323 ORTHO05D003726 6.6e-07 57.8 64 48.4
Gohir.A11G240550 Gossypium hirsutum HOM05D003323 ORTHO05D003726 6.6e-07 57.8 88 37.5
Gohir.D11G250000 Gossypium hirsutum HOM05D003323 ORTHO05D003726 6.6e-07 57.8 88 37.5
SEGI_32661 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 1.1e-06 57.0 78 38.5
TWI34G1347 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 1.5e-06 56.6 73 37.0
TWI53G1303 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 1.5e-06 56.6 74 40.5
Gorai.007G267800 Gossypium raimondii HOM05D003323 ORTHO05D003726 2.5e-06 55.8 88 36.4
Os03g0325900 Oryza sativa ssp. japonica HOM05D003323 ORTHO05D003726 4.3e-06 55.1 78 38.5
TWI53G2152 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 4.3e-06 55.1 73 39.7
TWI60G0208 Tripterygium wilfordii HOM05D003323 ORTHO05D003726 5.6e-06 54.7 118 31.4
Gorai.N026800 Gossypium raimondii HOM05D003323 ORTHO05D003726 7.3e-06 54.3 76 38.2
SEGI_18255 Sequoiadendron giganteum HOM05D003323 ORTHO05D003726 7.3e-06 54.3 65 41.5


User provided reference genes

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