Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 2.5e-297 1024.6 506 100.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.9e-224 781.9 462 82.3
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.5e-212 742.3 463 77.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 3.1e-210 735.3 462 77.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.3e-210 734.6 462 77.9
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.2e-209 733.4 463 76.9
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.4e-209 731.5 463 75.6
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.2e-208 729.2 462 76.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.8e-208 728.4 462 76.2
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.9e-207 726.1 463 74.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.4e-207 725.7 463 74.7
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.2e-206 723.4 462 75.3
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.1e-206 722.6 467 74.1
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 6.0e-206 721.1 463 76.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 5.1e-205 718.0 462 74.7
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.5e-204 715.7 463 74.3
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 3.2e-199 698.7 462 75.5
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 9.3e-199 697.2 483 72.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.0e-197 693.7 463 71.7
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-197 693.3 463 71.7
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.3e-197 692.6 463 72.1
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.0e-197 692.2 463 71.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 8.7e-197 690.6 436 75.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.9e-196 689.5 463 70.8
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 4.3e-196 688.3 462 72.3
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 7.4e-196 687.6 462 69.9
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.8e-195 685.6 463 72.4
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.3e-194 681.4 465 70.8
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 6.9e-194 681.0 463 71.3
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.0e-194 680.6 463 70.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.5e-193 679.9 462 71.4
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.6e-193 679.1 463 71.5
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.6e-193 679.1 463 71.5
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.6e-193 679.1 463 70.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 7.6e-193 677.6 460 71.5
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 4.9e-192 674.9 462 69.7
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 3.2e-191 672.2 463 69.3
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.6e-190 669.8 462 71.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 7.9e-190 667.5 463 70.0
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 8.7e-189 664.1 463 69.1
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 7.4e-188 661.0 463 67.8
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.1e-187 659.4 463 68.7
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 6.2e-187 657.9 462 69.9
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.1e-186 657.1 464 68.1
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.4e-186 656.8 462 67.7
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.4e-186 656.8 464 69.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 5.3e-186 654.8 466 67.6
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.3e-186 654.8 464 69.0
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.0e-184 650.6 468 68.4
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 6.5e-184 647.9 415 75.4
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.5e-183 644.8 462 65.8
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.2e-182 643.7 469 67.0
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.2e-182 643.7 463 66.5
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 8.7e-181 637.5 463 66.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.1e-180 637.1 463 66.1
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-180 636.7 437 71.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.9e-180 636.3 440 70.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.9e-180 636.3 463 66.3
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.3e-180 635.2 461 67.2
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.6e-179 633.3 459 66.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.6e-179 633.3 459 67.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 4.1e-178 628.6 417 72.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.5e-177 626.7 460 65.9
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.5e-177 625.2 460 65.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-175 619.0 461 66.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 3.2e-175 619.0 462 66.0
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 4.2e-175 618.6 463 65.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-174 617.1 461 65.9
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.6e-174 616.7 460 64.3
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-174 616.3 461 65.9
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 6.1e-174 614.8 464 66.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 7.9e-174 614.4 463 65.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 7.9e-174 614.4 461 65.9
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.9e-174 614.4 464 63.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.0e-173 614.0 460 65.4
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.0e-173 614.0 450 66.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-173 613.2 461 65.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-173 613.2 461 65.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-172 610.5 460 63.7
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 7.4e-172 607.8 460 63.7
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.2e-171 606.3 459 63.6
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.8e-171 605.9 459 64.3
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.0e-169 599.7 462 64.1
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 4.5e-169 598.6 459 62.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-168 597.0 459 62.7
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.2e-168 596.3 459 64.5
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.9e-168 595.9 459 63.0
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 3.8e-168 595.5 459 62.5
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-167 594.0 459 62.3
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.1e-167 594.0 458 62.9
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.1e-166 589.7 462 61.7
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.4e-165 587.0 437 67.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 3.0e-165 585.9 483 65.0
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-163 578.9 460 62.2
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 5.3e-162 575.1 462 60.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 7.0e-162 574.7 484 59.7
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.2e-161 573.9 338 82.0
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.3e-160 570.5 435 63.2
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.7e-160 570.1 435 62.5
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 7.2e-159 564.7 431 62.4
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 3.3e-156 555.8 439 60.8
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-156 555.4 448 61.8
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 6.3e-155 551.6 460 60.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.1e-154 550.8 465 59.4
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 9.1e-154 547.7 459 59.9
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 4.5e-153 545.4 461 56.6
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 5.0e-152 542.0 495 57.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 8.5e-152 541.2 463 57.2
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-150 536.2 445 60.4
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 6.8e-149 531.6 424 62.7
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 3.4e-148 529.3 462 60.8
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 3.4e-148 529.3 460 57.6
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-148 528.9 460 59.1
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 5.4e-146 521.9 452 54.4
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 4.5e-145 518.8 352 70.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-140 503.8 388 63.9
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.7e-139 500.4 432 60.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 9.5e-135 484.6 364 64.0
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.0e-133 479.6 507 51.3
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-131 474.2 446 56.3
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.7e-126 455.7 496 48.4
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 3.3e-103 379.8 464 45.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-88 330.9 251 67.3
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.3e-87 326.2 196 81.1
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 4.8e-86 322.8 429 41.5
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 2.4e-85 320.5 402 42.8
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.6e-81 306.2 196 75.5
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.3e-77 292.7 271 53.9
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.9e-75 286.2 195 72.3
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 8.4e-75 285.4 195 72.3
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 1.8e-69 267.7 225 60.4
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 5.9e-60 236.1 145 73.1
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-58 229.6 223 54.7
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 5.7e-55 219.5 222 52.7
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-54 218.4 315 43.2
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-49 201.1 377 35.5
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 7.7e-44 182.6 273 41.4
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 4.1e-37 160.2 110 67.3
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-35 154.8 181 47.5
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 4.2e-34 150.2 193 44.0
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.2e-34 150.2 115 64.3
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.5e-31 141.7 83 79.5
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.8e-30 136.7 109 64.2
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-28 130.6 144 50.7
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 6.5e-27 126.3 144 49.3
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 8.5e-27 125.9 213 38.0
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 2.5e-26 124.4 93 66.7
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.5e-26 123.2 93 68.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 4.7e-25 120.2 132 45.5
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-24 118.2 76 68.4
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.0e-24 117.1 76 68.4
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-23 115.2 213 38.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 9.8e-23 112.5 143 44.8
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-21 107.1 73 64.4
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 7.0e-21 106.3 78 60.3
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-20 104.4 109 51.4
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 3.5e-20 104.0 118 48.3
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.9e-19 100.9 56 80.4
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.5e-18 98.6 98 50.0
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-18 96.7 216 35.6
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.0e-17 92.8 56 73.2
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 8.0e-17 92.8 116 44.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.0e-16 92.4 57 66.7
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.0e-11 74.3 193 26.9
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-11 73.9 53 62.3
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.0e-11 73.6 177 28.2
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 9.5e-10 69.3 53 54.7
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.5e-10 69.3 177 28.8
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.7e-09 67.0 68 48.5
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 2.3e-08 64.7 51 58.8
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.3e-08 64.7 40 67.5
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 2.0e-07 61.6 47 57.4
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 7.5e-07 59.7 45 64.4
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 1.7e-06 58.5 51 54.9


User provided reference genes

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