Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.1e-58 228.8 112 100.0
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-54 215.7 112 95.5
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-51 206.1 112 90.2
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.2e-51 204.5 112 92.9
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.2e-43 177.2 87 98.9
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-42 174.1 87 95.4
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-41 172.9 87 96.6
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-40 169.1 112 79.5
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.5e-36 153.7 86 84.9
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.6e-34 149.4 86 83.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 7.9e-34 147.1 86 81.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 6.3e-31 137.5 85 75.3
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.2e-26 123.2 85 68.2
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 4.7e-26 121.3 89 65.2
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.0e-25 118.6 88 64.8
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.0e-24 115.9 85 63.5
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.3e-24 115.2 87 63.2
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 5.7e-24 114.4 86 65.1
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 9.7e-24 113.6 77 68.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.2e-23 112.5 86 66.3
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.2e-23 112.5 83 62.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.2e-23 112.5 83 62.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.8e-23 112.1 84 65.5
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 5.3e-22 107.8 76 69.7
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.0e-21 105.9 81 61.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.9e-21 104.4 93 57.0
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 5.9e-21 104.4 83 59.0
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.9e-20 102.1 93 55.9
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.9e-20 102.1 76 60.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 6.5e-20 100.9 85 55.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.1e-19 100.1 79 62.0
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.9e-19 99.4 83 56.6
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.5e-19 99.0 90 56.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.2e-19 98.6 85 52.9
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.2e-19 98.6 86 54.7
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 5.5e-19 97.8 79 55.7
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 7.2e-19 97.4 87 52.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.2e-18 96.7 86 60.5
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.1e-18 95.9 87 50.6
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.1e-18 95.9 93 51.6
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.7e-18 95.5 83 56.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.7e-18 95.5 83 56.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 2.7e-18 95.5 83 56.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 3.6e-18 95.1 87 51.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 6.1e-18 94.4 77 54.5
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.4e-17 93.2 83 51.8
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.8e-17 92.8 81 56.8
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.0e-17 91.7 87 50.6
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.7e-17 90.9 87 50.6
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.5e-16 89.7 93 50.5
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.0e-16 89.4 87 51.7
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.3e-16 88.6 86 53.5
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.3e-16 88.6 74 59.5
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 4.4e-16 88.2 83 55.4
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.7e-16 87.8 89 46.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 5.7e-16 87.8 87 44.8
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.5e-16 87.4 85 48.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 9.7e-16 87.0 93 45.2
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-15 86.3 87 48.3
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.7e-15 86.3 81 54.3
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 3.7e-15 85.1 83 54.2
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.7e-15 85.1 87 49.4
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.7e-15 85.1 87 50.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.1e-14 83.6 98 43.9
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-14 83.6 87 47.1
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.4e-14 83.2 93 48.4
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.4e-14 82.4 85 47.1
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.1e-14 81.6 85 42.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 7.0e-14 80.9 89 48.3
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 9.1e-14 80.5 81 51.9
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 2.7e-13 79.0 72 50.0
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 4.5e-13 78.2 87 41.4
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 5.9e-13 77.8 87 41.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 7.7e-13 77.4 83 50.6
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.0e-12 77.0 83 48.2
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.2e-12 75.9 76 53.9
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.9e-12 75.5 86 48.8
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.9e-12 75.5 90 45.6
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 5.0e-12 74.7 97 45.4
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-11 73.6 77 49.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-11 73.6 77 49.4
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.9e-11 72.8 81 46.9
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.5e-11 72.4 86 46.5
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 2.5e-11 72.4 77 49.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 3.2e-11 72.0 77 51.9
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.2e-11 72.0 95 42.1
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 4.2e-11 71.6 95 38.9
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 7.2e-11 70.9 82 48.8
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.6e-10 69.7 73 50.7
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 2.1e-10 69.3 73 46.6
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 2.7e-10 68.9 87 49.4
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.6e-10 68.6 85 44.7
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 6.1e-10 67.8 77 45.5
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 8.0e-10 67.4 81 48.1
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.8e-09 66.2 87 43.7
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.8e-09 66.2 89 40.4
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.2e-09 64.7 75 44.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 8.8e-09 63.9 83 44.6
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 8.8e-09 63.9 96 39.6
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 2.0e-08 62.8 73 45.2
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 9.8e-08 60.5 83 36.1
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.3e-07 60.1 72 43.1
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.3e-07 60.1 72 43.1
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.3e-07 60.1 72 43.1


User provided reference genes

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