Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-38 162.5 75 100.0
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-28 128.3 63 95.2
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.7e-28 127.1 71 84.5
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 8.2e-27 123.2 63 92.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 4.1e-26 120.9 63 90.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 7.0e-26 120.2 65 86.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.0e-26 120.2 65 84.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.5e-25 119.0 65 86.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.0e-25 118.6 63 87.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.5e-25 117.9 63 85.7
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.5e-25 117.5 62 87.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 7.7e-25 116.7 61 88.5
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 7.7e-25 116.7 67 82.1
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 7.7e-25 116.7 60 90.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.7e-25 116.7 60 90.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-24 116.3 63 85.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-24 116.3 63 85.7
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.7e-24 115.5 63 85.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.2e-24 115.2 61 86.9
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.2e-24 115.2 71 74.6
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.2e-24 115.2 63 82.5
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.2e-24 115.2 63 85.7
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.2e-24 115.2 71 74.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.9e-24 114.8 65 81.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.9e-24 114.8 64 79.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.9e-24 114.8 63 84.1
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.9e-24 114.8 60 86.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.9e-24 114.8 62 82.3
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.8e-24 114.4 60 86.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 3.8e-24 114.4 59 88.1
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.8e-24 114.4 63 84.1
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.8e-24 114.4 63 81.0
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 3.8e-24 114.4 63 81.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.8e-24 114.4 63 81.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.0e-24 114.0 63 81.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.0e-24 114.0 63 81.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 8.5e-24 113.2 60 85.0
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 8.5e-24 113.2 59 86.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 8.5e-24 113.2 63 82.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.1e-23 112.8 61 83.6
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.1e-23 112.8 63 81.0
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-23 112.8 59 84.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-23 112.5 62 80.6
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.4e-23 112.5 61 82.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.4e-23 112.5 59 88.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-23 112.5 59 88.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-23 112.5 59 88.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.9e-23 112.1 63 79.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.5e-23 111.7 63 79.4
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.5e-23 111.7 64 79.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.5e-23 111.7 59 84.7
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.5e-23 111.7 59 84.7
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.2e-23 111.3 60 85.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.2e-23 111.3 61 82.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.2e-23 111.3 59 86.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.2e-23 111.3 59 86.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.2e-23 111.3 59 86.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.2e-23 111.3 59 83.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-23 111.3 63 81.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.2e-23 110.9 63 82.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.2e-23 110.9 62 79.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 4.2e-23 110.9 59 84.7
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 4.2e-23 110.9 61 80.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.2e-23 110.9 61 83.6
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 5.5e-23 110.5 59 84.7
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.2e-23 110.2 61 80.3
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.2e-23 110.2 59 83.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.2e-23 110.2 59 83.1
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.2e-23 110.2 59 83.1
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 7.2e-23 110.2 63 81.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 9.4e-23 109.8 62 77.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 9.4e-23 109.8 59 83.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 9.4e-23 109.8 59 83.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 9.4e-23 109.8 59 83.1
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.4e-23 109.8 62 77.4
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 9.4e-23 109.8 63 76.2
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-22 109.4 61 78.7
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-22 109.4 59 81.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.6e-22 109.0 63 77.8
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.1e-22 108.6 63 74.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.1e-22 108.6 63 77.8
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.1e-22 108.6 59 81.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.1e-22 108.6 59 81.4
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.7e-22 108.2 61 77.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.6e-22 107.8 61 75.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.6e-22 107.8 59 81.4
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 3.6e-22 107.8 61 80.3
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.7e-22 107.5 64 78.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 4.7e-22 107.5 64 78.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 4.7e-22 107.5 61 77.0
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 4.7e-22 107.5 64 75.0
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.1e-22 107.1 61 77.0
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.1e-22 107.1 63 76.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 6.1e-22 107.1 63 76.2
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 6.1e-22 107.1 59 81.4
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 6.1e-22 107.1 60 80.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 6.1e-22 107.1 61 75.4
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 6.1e-22 107.1 61 75.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 8.0e-22 106.7 58 82.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.0e-21 106.3 59 83.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.0e-21 106.3 63 76.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-21 105.9 55 89.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.9e-21 104.4 59 81.4
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.2e-21 104.0 59 79.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 5.2e-21 104.0 59 79.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.8e-21 103.2 61 72.1
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 8.8e-21 103.2 64 67.2
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 8.8e-21 103.2 64 67.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 8.8e-21 103.2 64 67.2
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 8.8e-21 103.2 64 67.2
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.1e-20 102.8 59 74.6
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-20 102.8 59 76.3
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.5e-20 102.4 62 72.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.5e-20 102.4 63 66.7
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 2.0e-20 102.1 61 73.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.6e-20 101.7 59 78.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 2.6e-20 101.7 62 69.4
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 4.4e-20 100.9 95 55.8
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 9.7e-20 99.8 56 78.6
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 9.7e-20 99.8 56 78.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 9.7e-20 99.8 56 78.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 9.7e-20 99.8 56 78.6
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.3e-19 99.4 51 88.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.3e-19 99.4 64 65.6
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.8e-19 98.2 60 70.0
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 8.2e-19 96.7 51 86.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 8.2e-19 96.7 64 67.2
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.2e-16 88.6 63 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 2.9e-16 88.2 57 64.9
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.9e-16 88.2 44 88.6
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 5.0e-16 87.4 54 72.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 9.4e-15 83.2 62 59.7
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.2e-14 82.8 62 54.8
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 4.8e-11 70.9 58 51.7
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.4e-10 69.3 72 45.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 4.5e-09 64.3 61 47.5
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.6e-06 54.7 58 43.1
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 4.7e-06 54.3 54 42.6
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.1e-06 53.9 33 72.7


User provided reference genes

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