Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 6.3e-123 444.1 226 100.0
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.0e-122 440.7 226 99.1
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.1e-109 398.7 224 88.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.2e-108 396.7 222 89.2
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.7e-107 391.7 240 83.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 6.6e-104 380.9 226 84.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.2e-100 370.2 228 81.6
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.0e-100 369.4 228 81.1
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.4e-100 368.2 228 80.3
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 7.5e-100 367.5 216 85.2
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.4e-98 362.5 221 80.1
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.5e-97 358.6 228 78.5
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.5e-97 358.6 218 80.3
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 3.5e-97 358.6 230 80.0
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 6.0e-97 357.8 226 80.1
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 230 78.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.3e-96 355.9 225 78.7
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.3e-96 355.9 204 86.8
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 3.9e-96 355.1 223 78.5
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 6.6e-96 354.4 223 78.5
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 8.6e-96 354.0 226 77.9
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.1e-95 353.6 228 78.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-95 353.6 223 78.5
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.1e-95 353.6 230 78.7
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.5e-95 353.2 223 78.5
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.5e-95 353.2 218 80.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.9e-95 352.8 228 78.1
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.5e-95 352.4 228 77.6
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.5e-95 352.4 228 76.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.3e-95 352.1 218 80.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.3e-95 352.1 226 78.8
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 4.3e-95 351.7 226 77.4
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 7.3e-95 350.9 222 78.4
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 7.3e-95 350.9 223 77.6
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 7.3e-95 350.9 223 77.6
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-94 350.1 226 78.3
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.6e-94 349.7 226 77.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.1e-94 349.4 230 76.5
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.1e-94 349.4 223 77.1
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.1e-94 349.4 228 75.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.1e-94 349.4 226 78.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 2.1e-94 349.4 223 76.7
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.8e-94 349.0 217 79.3
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 3.6e-94 348.6 226 77.9
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.6e-94 348.6 231 77.1
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.7e-94 348.2 226 77.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 4.7e-94 348.2 219 78.1
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 6.2e-94 347.8 226 77.4
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 8.1e-94 347.4 224 76.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 8.1e-94 347.4 226 75.7
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 8.1e-94 347.4 218 78.4
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.4e-93 346.7 222 77.5
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.8e-93 346.3 223 77.6
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-93 346.3 222 76.1
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-93 346.3 226 77.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.8e-93 346.3 222 77.0
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.3e-93 345.9 221 77.8
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 3.1e-93 345.5 226 75.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.1e-93 345.5 232 75.4
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-93 345.1 226 75.2
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 5.2e-93 344.7 224 75.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.2e-93 344.7 219 76.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 5.2e-93 344.7 221 76.9
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 5.2e-93 344.7 223 76.7
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 5.2e-93 344.7 223 75.3
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 6.8e-93 344.4 227 75.8
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 6.8e-93 344.4 221 78.3
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 6.8e-93 344.4 223 76.7
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 6.8e-93 344.4 224 75.9
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 8.9e-93 344.0 219 76.7
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-92 343.6 225 75.1
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 4.4e-92 341.7 223 74.0
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 5.8e-92 341.3 222 74.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 5.8e-92 341.3 226 75.7
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 7.6e-92 340.9 221 76.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 9.9e-92 340.5 223 74.9
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 74.7
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.3e-91 340.1 221 77.8
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.7e-91 339.7 221 75.6
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-91 339.7 225 74.7
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.7e-91 339.7 220 76.8
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 6.4e-91 337.8 224 75.9
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 6.4e-91 337.8 225 74.2
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 8.3e-91 337.4 223 76.2
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.9e-90 336.3 219 74.9
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.4e-90 335.9 226 74.3
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 9.2e-90 334.0 226 74.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.2e-89 333.6 220 76.4
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.7e-89 332.4 218 74.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 3.5e-89 332.0 219 74.4
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.0e-88 330.5 224 75.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.3e-88 330.1 211 80.1
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 3.0e-88 328.9 226 71.7
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 8.6e-88 327.4 227 74.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.5e-87 325.9 226 71.2
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 4.3e-87 325.1 215 75.3
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 4.3e-87 325.1 215 75.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.3e-87 325.1 226 70.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 7.3e-87 324.3 226 71.2
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.6e-86 323.2 209 75.6
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-85 320.1 206 75.2
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.4e-85 320.1 207 75.4
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.8e-85 319.7 227 72.7
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 4.0e-85 318.5 219 73.5
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 5.2e-85 318.2 206 75.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.5e-84 316.6 212 72.2
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.6e-84 315.8 226 72.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.4e-84 315.5 226 72.1
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 7.6e-84 314.3 226 70.8
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.3e-83 313.5 201 80.1
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-83 313.2 209 74.2
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.7e-83 313.2 209 74.2
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.7e-83 313.2 203 75.9
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 2.9e-83 312.4 220 73.6
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 4.9e-83 311.6 204 75.5
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.9e-83 311.6 205 75.6
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 4.9e-83 311.6 204 74.0
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.1e-81 306.2 224 67.0
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.7e-81 305.8 262 63.4
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 7.8e-81 304.3 204 74.0
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.0e-80 303.9 252 63.9
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 8.7e-80 300.8 224 70.5
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.1e-79 300.4 210 69.0
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.9e-79 299.7 216 69.9
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.5e-79 299.3 205 69.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.3e-78 297.0 202 72.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.8e-77 293.1 186 78.5
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.3e-77 291.6 211 71.6
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.2e-76 290.4 221 63.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 3.4e-76 288.9 202 70.3
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.9e-75 285.8 226 67.3
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.4e-74 282.7 213 64.3
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 3.2e-74 282.3 208 66.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.1e-71 273.9 226 61.9
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 6.9e-69 264.6 175 74.3
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.4e-68 262.3 211 64.5
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 6.4e-67 258.1 160 80.6
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.2e-66 255.4 231 60.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 2.1e-65 253.1 223 59.6
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 4.6e-65 251.9 204 63.7
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.7e-64 247.7 221 61.1
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 8.7e-64 247.7 180 70.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.1e-63 247.3 214 60.3
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.4e-61 240.4 218 59.6
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 2.4e-61 239.6 206 62.6
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 6.9e-61 238.0 159 74.8
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 2.2e-59 233.0 213 56.8
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.4e-58 230.3 152 77.6
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.5e-57 225.7 218 54.6
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.5e-57 225.7 225 54.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 7.9e-57 224.6 183 66.7
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.3e-56 223.0 186 64.5
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.9e-56 222.2 209 56.5
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.0e-53 211.1 226 54.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 2.2e-51 206.5 211 51.7
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 5.9e-44 181.8 213 53.5
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.4e-40 170.6 240 41.7
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-40 170.2 113 77.0
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.8e-38 162.2 231 43.7
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 4.8e-38 162.2 240 42.5
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 5.0e-35 152.1 94 76.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 5.5e-34 148.7 217 41.5
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 9.4e-34 147.9 104 68.3
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-33 146.7 111 64.0
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-31 141.0 115 67.8
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.5e-28 129.0 114 59.6
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 8.5e-27 124.8 157 43.3
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 8.5e-27 124.8 78 76.9
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.0e-20 103.6 79 67.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 7.2e-18 95.1 83 63.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 9.8e-15 84.7 201 30.3
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-13 80.9 73 56.2
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.7e-09 65.9 105 40.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 5.2e-08 62.4 74 52.7
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 9.8e-07 58.2 40 57.5


User provided reference genes

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