Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 3.4e-87 325.1 180 100.0
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 4.6e-60 235.0 186 75.3
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 5.1e-59 231.5 178 73.0
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 5.1e-59 231.5 178 73.0
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.5e-58 229.9 188 72.9
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.6e-58 229.2 177 74.0
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 4.4e-58 228.4 178 75.3
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 7.4e-58 227.6 182 73.6
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.3e-57 226.9 188 72.9
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.1e-56 223.8 186 73.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.8e-56 223.0 185 71.4
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.1e-56 222.2 187 72.7
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.1e-56 222.2 187 72.7
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 9.1e-56 220.7 183 69.9
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 9.1e-56 220.7 187 69.0
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.2e-55 220.3 189 70.4
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.2e-55 220.3 186 70.4
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.2e-55 220.3 186 69.9
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.5e-55 219.9 178 69.1
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.5e-55 219.9 187 71.7
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.6e-55 219.2 193 69.9
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 3.4e-55 218.8 188 69.7
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 4.5e-55 218.4 189 70.4
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 7.7e-55 217.6 182 69.2
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.0e-54 217.2 178 69.1
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.7e-54 216.5 183 69.9
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 8.5e-54 214.2 180 68.3
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.4e-53 213.4 186 68.8
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.5e-53 212.6 190 68.9
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 4.2e-53 211.8 178 70.2
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 4.2e-53 211.8 185 70.3
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.5e-53 211.5 187 67.4
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 7.2e-53 211.1 181 68.0
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.6e-52 209.9 201 63.2
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.6e-52 208.8 187 66.8
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 6.1e-52 208.0 178 68.5
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.0e-51 207.2 185 66.5
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.4e-51 206.8 185 66.5
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.4e-51 206.8 186 66.7
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.8e-51 206.5 179 67.6
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 3.0e-51 205.7 180 66.7
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-51 205.3 187 65.8
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 3.3e-50 202.2 189 64.6
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 5.7e-50 201.4 184 65.8
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 7.4e-50 201.1 178 68.0
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 1.7e-49 199.9 187 63.6
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.2e-49 199.5 188 65.4
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 2.2e-49 199.5 187 65.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.2e-49 199.5 187 65.2
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 2.2e-49 199.5 178 66.9
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.8e-49 199.1 184 64.7
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 2.8e-49 199.1 181 66.9
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 3.7e-49 198.7 179 67.0
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 4.8e-49 198.4 186 63.4
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 4.8e-49 198.4 232 55.6
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 4.8e-49 198.4 190 63.7
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.4e-48 196.8 192 65.1
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 2.4e-48 196.1 181 64.1
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 2.4e-48 196.1 181 64.1
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 3.1e-48 195.7 184 66.3
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.6e-47 193.4 186 63.4
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 2.0e-47 193.0 187 63.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 2.0e-47 193.0 147 74.8
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 2.6e-47 192.6 186 62.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 3.5e-47 192.2 187 62.0
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 4.5e-47 191.8 187 61.5
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 5.9e-47 191.4 192 63.5
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.3e-46 190.3 182 63.7
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.7e-46 189.9 191 61.3
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.2e-46 189.5 185 60.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.2e-46 189.5 187 62.6
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 5.0e-46 188.3 181 64.1
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 6.5e-46 188.0 180 63.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 8.5e-46 187.6 181 64.1
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 8.5e-46 187.6 181 64.1
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 8.5e-46 187.6 185 61.1
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.9e-45 186.4 180 62.8
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.9e-45 186.4 172 65.1
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 4.2e-45 185.3 184 62.0
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 4.2e-45 185.3 184 62.0
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 5.5e-45 184.9 181 62.4
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 7.2e-45 184.5 181 62.4
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 9.4e-45 184.1 181 63.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.2e-44 183.7 184 60.3
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.2e-44 183.7 184 61.4
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 2.1e-44 183.0 194 61.3
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 3.6e-44 182.2 196 62.2
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.6e-44 182.2 173 64.2
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 6.1e-44 181.4 204 59.8
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.4e-43 180.3 186 59.7
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 3.0e-43 179.1 185 62.7
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 9.7e-42 174.1 174 63.2
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.7e-41 172.2 191 58.1
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 5.9e-39 164.9 176 58.0
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 7.7e-39 164.5 191 58.1
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 6.5e-38 161.4 182 57.1
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 1.5e-37 160.2 204 52.5
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 4.7e-36 155.2 133 65.4
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.0e-34 149.8 146 63.0
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 5.7e-34 148.3 190 51.1
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.7e-33 145.6 187 52.4
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.4e-32 143.7 126 63.5
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.1e-32 142.5 186 50.0
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.2e-31 140.6 184 51.1
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.0e-31 139.8 197 49.7
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 2.0e-31 139.8 182 55.5
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.0e-31 139.8 180 55.6
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 1.0e-30 137.5 180 53.3
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.5e-29 133.7 191 50.3
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.5e-29 133.7 89 85.4
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.2e-28 130.6 131 56.5
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.6e-28 130.2 96 77.1
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.0e-27 127.5 136 57.4
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.8e-27 126.7 94 75.5
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.8e-27 126.7 124 59.7
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.3e-27 126.3 122 60.7
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 4.0e-27 125.6 124 59.7
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 5.2e-27 125.2 140 54.3
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.5e-26 123.6 161 50.3
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 9.8e-26 120.9 171 49.7
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-24 117.1 159 46.5
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.4e-24 116.3 249 41.4
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 1.0e-19 100.9 110 54.5
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.0e-18 96.7 96 60.4
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.1e-16 90.9 75 60.0
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.4e-16 88.6 64 84.4
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 5.9e-15 85.1 126 48.4
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 5.0e-14 82.0 84 52.4
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.6e-12 77.0 141 44.7
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 4.7e-12 75.5 112 46.4
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 4.0e-11 72.4 81 56.8
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 5.8e-10 68.6 93 48.4
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 1.3e-09 67.4 81 51.9
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 1.3e-09 67.4 81 51.9
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 7.0e-08 61.6 177 35.6
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 9.2e-08 61.2 43 86.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 9.2e-08 61.2 123 40.7
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 6.0e-07 58.5 84 47.6
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 7.8e-07 58.2 62 53.2


User provided reference genes

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