Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.4e-226 786.6 408 100.0
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.5e-175 619.8 399 83.7
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.9e-174 615.5 399 83.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.9e-174 614.8 399 83.0
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-173 612.8 399 83.0
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 3.8e-166 588.6 399 79.4
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 4.9e-166 588.2 369 83.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.3e-163 579.3 403 77.9
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 5.1e-163 578.2 394 78.7
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.5e-162 576.6 400 77.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-162 576.2 426 74.4
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 2.5e-162 575.9 399 77.7
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 3.3e-162 575.5 399 77.2
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 3.3e-162 575.5 399 77.2
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 1.6e-161 573.2 406 76.6
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 6.2e-161 571.2 401 77.6
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 6.2e-161 571.2 401 76.6
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.4e-160 569.3 395 76.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 3.1e-160 568.9 395 75.9
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 9.0e-160 567.4 406 75.6
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.2e-159 567.0 392 78.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-159 566.6 365 81.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.0e-159 566.2 399 75.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 3.4e-159 565.5 401 76.6
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 4.4e-159 565.1 400 76.2
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 5.8e-159 564.7 400 75.8
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 9.9e-159 563.9 384 78.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 9.9e-159 563.9 384 78.1
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 9.9e-159 563.9 400 75.8
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.3e-158 563.5 399 75.7
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.3e-158 563.5 395 75.9
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 1.7e-158 563.1 399 75.9
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.7e-158 563.1 399 75.9
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.7e-158 563.1 396 76.3
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.2e-158 562.8 399 75.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.9e-158 562.4 397 75.8
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 2.9e-158 562.4 401 75.6
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 3.8e-158 562.0 395 74.9
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 3.8e-158 562.0 400 76.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 3.8e-158 562.0 395 75.7
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 4.9e-158 561.6 448 69.0
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 8.4e-158 560.8 398 75.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.4e-157 560.1 401 75.1
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 2.4e-157 559.3 396 75.8
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 4.2e-157 558.5 404 74.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 4.2e-157 558.5 399 74.9
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 5.4e-157 558.1 400 75.8
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 5.4e-157 558.1 401 75.8
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 7.1e-157 557.8 395 74.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 4.6e-156 555.1 393 75.3
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 6.0e-156 554.7 399 73.9
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.3e-155 553.5 395 75.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.7e-155 553.1 385 76.1
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 2.3e-155 552.7 400 74.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.3e-155 552.7 393 75.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 5.1e-155 551.6 401 73.8
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 5.1e-155 551.6 383 77.5
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 5.1e-155 551.6 398 74.1
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.3e-153 547.0 399 73.7
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.1e-153 546.2 401 73.6
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 2.8e-153 545.8 393 74.0
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 2.8e-153 545.8 400 72.8
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 3.6e-153 545.4 393 74.8
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 4.8e-153 545.0 399 73.7
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 6.2e-153 544.7 399 73.4
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 8.1e-153 544.3 393 74.0
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 2.4e-152 542.7 402 73.4
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.0e-152 542.0 394 74.6
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 5.3e-152 541.6 400 73.2
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.9e-152 541.2 393 73.3
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.2e-151 540.4 395 73.9
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.2e-151 540.4 400 72.5
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.3e-150 537.0 395 72.2
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-150 536.6 426 70.4
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 3.8e-150 535.4 395 72.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 3.8e-150 535.4 400 72.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 4.9e-150 535.0 395 72.4
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 6.4e-150 534.6 395 71.4
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 8.4e-150 534.3 401 72.8
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.1e-149 533.9 395 72.4
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.1e-149 533.9 395 72.4
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-149 533.1 393 73.0
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 3.2e-149 532.3 395 71.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 3.2e-149 532.3 395 72.2
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 3.2e-149 532.3 396 72.2
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 7.1e-149 531.2 391 72.6
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 9.3e-149 530.8 395 72.2
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 4.6e-148 528.5 393 72.3
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 4.6e-148 528.5 395 70.9
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 2.3e-147 526.2 395 71.1
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.5e-146 522.7 392 71.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 3.3e-146 522.3 392 71.2
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 5.6e-146 521.5 399 72.2
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 2.1e-145 519.6 397 70.0
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 4.8e-145 518.5 392 70.9
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 4.8e-145 518.5 392 70.9
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 4.8e-145 518.5 392 70.9
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.8e-145 518.5 392 70.7
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.4e-144 516.9 399 70.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.4e-144 516.2 379 75.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.3e-142 510.4 375 74.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.2e-142 509.6 401 69.6
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.8e-142 508.8 393 70.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.5e-140 502.3 395 70.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 4.6e-140 501.9 367 73.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.0e-140 501.5 394 70.8
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.3e-137 493.8 374 71.1
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.2e-135 487.3 394 67.8
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.8e-134 482.3 399 65.7
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.8e-134 482.3 399 65.7
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 9.3e-133 477.6 340 76.5
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.0e-131 474.2 360 70.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.7e-130 468.4 387 66.4
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.7e-130 467.6 399 64.4
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.7e-114 415.2 264 82.2
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.6e-100 369.4 264 74.6
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 6.1e-100 368.6 411 56.4
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 1.8e-99 367.1 366 58.5
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 5.3e-96 355.5 385 52.7
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.2e-93 345.1 262 73.3
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.3e-86 323.6 220 75.5
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.5e-85 320.1 391 51.9
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.8e-84 316.6 371 47.7
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.5e-82 308.5 373 47.5
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.6e-79 300.8 373 46.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.0e-78 298.1 282 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.7e-71 273.5 376 44.4
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-71 273.5 226 71.2
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.3e-69 265.4 250 60.8
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.0e-67 259.6 376 40.4
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 8.9e-67 258.5 206 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.9e-65 252.7 373 42.1
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.3e-65 251.9 374 40.1
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-59 234.2 364 40.7
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-56 224.6 166 74.7
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-49 201.1 201 57.7
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.3e-37 160.2 98 82.7
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 8.7e-30 135.6 106 64.2
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 7.1e-24 115.9 63 87.3
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-22 111.7 95 62.1
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 3.2e-16 90.5 58 72.4
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-14 84.3 47 83.0
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 1.4e-11 75.1 39 84.6
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 4.1e-11 73.6 36 88.9


User provided reference genes

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