Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.8e-107 391.7 288 100.0
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.2e-102 377.1 201 95.5
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.1e-60 237.7 222 60.8
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 2.1e-54 216.9 218 57.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.9e-47 193.7 212 54.7
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.8e-43 179.9 204 52.0
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 7.0e-42 175.3 201 50.2
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 2.0e-41 173.7 205 48.3
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 2.0e-41 173.7 203 53.7
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 4.5e-41 172.6 203 51.2
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 4.5e-41 172.6 226 46.0
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.7e-40 170.6 208 53.8
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.7e-40 170.6 222 46.8
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.9e-40 169.9 217 52.5
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 7.2e-39 165.2 203 50.2
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 9.5e-39 164.9 228 47.4
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.6e-38 164.1 228 46.5
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 2.1e-38 163.7 228 46.9
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 4.0e-37 159.5 210 45.2
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.4e-36 156.4 201 48.3
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 4.4e-36 156.0 211 47.4
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 4.4e-36 156.0 221 50.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 6.3e-35 152.1 211 47.9
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.8e-34 150.6 223 46.6
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.0e-32 144.8 205 47.3
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.7e-32 144.1 200 46.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 2.3e-32 143.7 216 45.4
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.5e-31 141.0 205 43.4
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 5.6e-31 139.0 210 43.8
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 1.2e-30 137.9 205 42.9
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 1.2e-30 137.9 213 42.3
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 1.6e-30 137.5 200 46.0
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 2.8e-30 136.7 213 46.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 1.4e-29 134.4 213 40.8
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 3.0e-29 133.3 213 41.8
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 8.9e-29 131.7 215 41.4
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.2e-28 131.3 203 46.3
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.2e-28 131.3 204 44.1
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.6e-28 130.2 207 44.4
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 7.5e-28 128.6 209 39.2
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.3e-27 127.9 210 39.5
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 2.2e-27 127.1 211 41.7
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.2e-27 127.1 209 41.6
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.7e-27 126.3 218 43.6
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 3.7e-27 126.3 208 46.2
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.4e-26 124.4 211 40.8
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.4e-26 124.4 208 41.3
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-25 120.9 206 36.9
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.6e-25 120.9 209 41.1
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.0e-25 120.6 215 37.2
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.5e-25 119.8 208 40.4
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 3.0e-24 116.7 207 40.1
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.1e-23 114.8 208 41.3
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.9e-23 114.0 201 36.3
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 2.5e-23 113.6 211 46.4
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 7.3e-23 112.1 204 39.2
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 7.3e-23 112.1 204 39.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.6e-22 110.9 220 38.2
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 2.8e-22 110.2 205 41.0
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 3.6e-22 109.8 203 37.4
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 3.6e-22 109.8 197 38.1
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 1.0e-21 108.2 199 40.7
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 1.8e-21 107.5 203 39.9
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.3e-21 107.1 205 41.0
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 5.2e-21 105.9 211 37.0
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 8.9e-21 105.1 210 38.1
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 8.9e-21 105.1 200 38.0
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.9e-21 105.1 200 38.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.5e-20 104.4 209 38.3
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.0e-20 104.0 219 35.6
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.0e-20 104.0 200 38.0
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 2.6e-20 103.6 205 41.5
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 4.4e-20 102.8 202 41.1
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 7.5e-20 102.1 215 34.9
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.3e-19 101.3 202 39.6
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.3e-19 101.3 210 39.5
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.7e-19 100.9 211 39.8
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 2.2e-19 100.5 202 40.6
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 4.9e-19 99.4 211 39.3
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 4.9e-19 99.4 212 39.2
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 4.9e-19 99.4 203 37.4
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.4e-19 99.0 200 37.0
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.4e-19 99.0 200 38.0
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 6.4e-19 99.0 220 40.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 8.3e-19 98.6 210 40.0
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 8.3e-19 98.6 221 38.9
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.9e-18 97.4 194 39.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.9e-18 97.4 212 37.7
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 5.4e-18 95.9 222 34.2
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 7.0e-18 95.5 197 38.6
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 9.2e-18 95.1 206 36.9
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.2e-17 94.7 130 42.3
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.6e-17 94.4 214 36.9
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 3.5e-17 93.2 219 35.6
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 3.5e-17 93.2 203 37.4
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 1.0e-16 91.7 206 35.9
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.3e-16 91.3 206 35.9
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 2.3e-16 90.5 201 37.8
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 3.9e-16 89.7 201 39.8
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 3.9e-16 89.7 202 40.6
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 3.9e-16 89.7 201 34.3
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.9e-15 87.4 205 36.6
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 4.3e-15 86.3 226 34.5
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 4.3e-15 86.3 200 40.5
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 5.6e-15 85.9 200 41.0
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 7.3e-15 85.5 201 34.8
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 1.6e-14 84.3 217 33.6
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 4.7e-14 82.8 211 36.5
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 8.1e-14 82.0 218 34.4
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 3.4e-12 76.6 203 36.0
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 3.7e-11 73.2 201 33.3
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 4.9e-11 72.8 199 35.2
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.1e-10 71.6 198 30.3
Gorai.013G234200 Gossypium raimondii HOM05D001903 ORTHO05D001847 3.5e-09 66.6 206 33.5
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.3e-08 64.7 203 30.5
Gohir.A13G199800 Gossypium hirsutum HOM05D001903 ORTHO05D001847 1.7e-08 64.3 208 33.2
Gohir.D13G205300 Gossypium hirsutum HOM05D001903 ORTHO05D001847 1.7e-08 64.3 206 32.0
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.0e-08 63.5 50 62.0
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 6.6e-08 62.4 46 65.2
DCAR_016260 Daucus carota HOM05D000020 ORTHO05D000543 1.5e-07 61.2 91 37.4
Mapoly0003s0253 Marchantia polymorpha HOM05D036240 ORTHO05D031199 3.3e-07 60.1 63 46.0
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 9.5e-07 58.5 98 37.8
Duzib187G1121 Durio zibethinus HOM05D001903 ORTHO05D001847 9.5e-07 58.5 212 33.0
Ah.14g079690 Amaranthus hybridus HOM05D001903 ORTHO05D001847 1.2e-06 58.2 65 53.8
Cc06_g08340 Coffea canephora HOM05D001903 ORTHO05D001847 1.2e-06 58.2 215 28.4
arahy.Tifrunner.gnm1.ann1.6P54CG Arachis hypogaea HOM05D001903 ORTHO05D001847 1.6e-06 57.8 49 53.1
SGA_v2.0_scaffold5G02688 Striga asiatica HOM05D001903 ORTHO05D001847 1.6e-06 57.8 219 31.5
Gohir.A06G055100 Gossypium hirsutum HOM05D001903 ORTHO05D001847 2.1e-06 57.4 200 30.5
Sc08g0006520 Simmondsia chinensis HOM05D001903 ORTHO05D001847 2.1e-06 57.4 74 48.6
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 2.1e-06 57.4 40 62.5
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 2.8e-06 57.0 239 27.2
Dinv30598 Davidia involucrata HOM05D001903 ORTHO05D001847 2.8e-06 57.0 217 28.1
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 2.8e-06 57.0 203 29.1
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.6e-06 56.6 52 48.1
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 4.7e-06 56.2 74 43.2
Lsat_1_v5_gn_7_107661 Lactuca sativa HOM05D001903 ORTHO05D001847 4.7e-06 56.2 160 30.6
TPR.G37230 Trifolium pratense HOM05D001903 ORTHO05D001847 4.7e-06 56.2 44 56.8
Duzib150G0453 Durio zibethinus HOM05D001903 ORTHO05D001847 6.2e-06 55.8 101 33.7
Glyma.13G365300 Glycine max HOM05D001903 ORTHO05D001847 6.2e-06 55.8 115 30.4
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.2e-06 55.8 35 68.6
unitig_52.g17457 Utricularia gibba HOM05D001903 ORTHO05D001847 6.2e-06 55.8 41 61.0
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 8.1e-06 55.5 73 41.1
Ciclev10009202m.g Citrus clementina HOM05D001903 ORTHO05D001847 8.1e-06 55.5 50 52.0
ECA240G1246 Erigeron canadensis HOM05D001903 ORTHO05D001847 8.1e-06 55.5 62 43.5
Migut.D01072 Erythranthe guttata HOM05D001903 ORTHO05D001847 8.1e-06 55.5 36 69.4


User provided reference genes

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