Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-184 649.8 323 100.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.9e-176 622.5 306 100.0
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.4e-152 541.2 325 82.8
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.6e-151 538.1 323 82.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.3e-147 524.6 323 81.4
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.8e-146 521.2 323 80.8
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 5.8e-146 521.2 323 79.9
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 4.3e-141 505.0 323 75.5
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 6.2e-140 501.1 392 66.6
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.4e-139 499.2 324 76.9
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 5.3e-139 498.0 379 67.3
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 4.5e-138 495.0 324 76.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.9e-137 492.3 323 74.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 6.5e-137 491.1 323 74.3
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 3.2e-136 488.8 363 68.0
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.2e-136 488.4 323 74.3
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 5.5e-136 488.0 324 74.7
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 9.3e-136 487.3 323 73.4
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 3.5e-135 485.3 323 74.0
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.8e-134 483.0 324 74.1
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.3e-134 482.6 330 74.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.5e-133 479.9 324 75.3
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 2.5e-133 479.2 323 72.8
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 7.4e-133 477.6 323 72.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 6.3e-132 474.6 324 71.9
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.1e-131 473.8 328 71.3
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.1e-131 472.2 323 73.7
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.2e-130 470.3 324 71.6
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 2.6e-130 469.2 325 72.6
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.4e-130 468.8 324 72.2
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.4e-130 468.8 324 71.6
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-129 467.2 324 72.5
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-129 467.2 324 71.6
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-129 466.1 324 72.2
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 5.0e-129 464.9 323 71.8
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.4e-128 463.4 328 70.7
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 2.5e-128 462.6 326 71.5
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.2e-127 460.3 326 70.9
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 6.7e-126 454.5 338 67.5
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 6.7e-126 454.5 325 70.5
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.1e-125 453.8 324 69.1
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.4e-125 451.1 323 69.7
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.3e-124 450.3 325 70.8
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.6e-124 449.9 323 66.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.2e-124 449.5 306 71.2
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.1e-123 447.2 323 70.6
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.8e-123 446.4 323 66.3
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.1e-123 445.7 323 69.3
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 3.1e-123 445.7 326 69.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 4.1e-123 445.3 323 67.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 6.9e-123 444.5 323 70.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.5e-122 443.4 323 68.4
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.5e-122 443.4 323 67.5
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.6e-122 442.6 338 67.2
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.6e-122 442.6 323 68.4
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.4e-122 442.2 323 67.2
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.4e-122 442.2 323 66.9
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 5.9e-122 441.4 341 66.0
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 7.7e-122 441.0 324 70.1
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.3e-121 440.3 323 67.8
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.9e-120 436.4 324 67.0
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 7.2e-120 434.5 324 66.7
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 4.6e-119 431.8 323 68.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.1e-119 431.4 323 66.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.1e-119 431.4 324 67.3
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 6.1e-119 431.4 323 65.6
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 7.9e-119 431.0 323 66.6
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.1e-118 428.3 314 68.2
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 8.8e-118 427.6 326 69.3
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.5e-117 426.8 323 66.6
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 9.7e-117 424.1 324 67.0
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.3e-116 423.7 323 66.3
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 6.3e-116 421.4 323 64.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.8e-115 419.9 308 67.9
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.8e-115 419.9 308 67.5
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.4e-115 419.5 324 65.7
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.1e-115 419.1 325 67.1
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.2e-114 417.2 325 67.1
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.5e-114 416.8 323 65.0
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 5.9e-114 414.8 333 62.8
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.3e-113 413.7 324 63.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 8.5e-113 411.0 323 61.3
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.9e-112 409.8 323 62.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.9e-112 409.8 364 57.4
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 3.2e-112 409.1 324 63.6
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 7.2e-112 407.9 324 64.5
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 7.2e-112 407.9 324 64.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.7e-111 405.2 349 58.5
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.1e-111 404.8 327 62.7
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.1e-111 404.8 326 62.0
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.4e-110 403.7 333 61.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.3e-110 402.9 326 62.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-109 400.6 359 58.2
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.0e-109 399.8 362 57.5
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.3e-109 399.1 326 60.7
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 7.4e-109 397.9 323 65.0
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.8e-107 393.3 326 62.9
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.1e-107 392.1 326 62.9
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.0e-105 387.5 368 56.2
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.7e-105 386.7 326 60.7
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.9e-105 386.0 327 63.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.1e-104 384.0 234 80.3
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 7.2e-104 381.3 249 76.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 4.7e-103 378.6 284 69.0
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 8.0e-103 377.9 323 63.8
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 5.2e-102 375.2 324 60.8
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.2e-100 369.8 346 56.4
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 6.3e-100 368.2 362 55.8
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.7e-98 361.3 285 67.0
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-96 357.1 268 66.0
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 4.2e-96 355.5 324 55.2
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 9.4e-96 354.4 323 53.6
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.2e-94 348.6 306 61.1
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.6e-93 346.3 329 53.8
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 9.1e-91 337.8 221 73.3
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-79 300.8 326 54.0
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.6e-79 300.4 325 53.5
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.7e-76 290.4 261 60.2
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 8.3e-76 288.1 308 50.6
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.1e-75 285.8 294 55.4
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.5e-72 276.6 211 67.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 9.5e-72 274.6 210 67.1
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 3.6e-71 272.7 291 52.6
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 8.0e-71 271.6 247 55.5
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 6.8e-70 268.5 323 44.9
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.7e-68 262.7 170 74.1
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.7e-65 253.8 145 88.3
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 6.6e-65 251.9 323 44.9
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.9e-61 238.0 172 67.4
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 3.2e-59 233.0 165 70.9
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 4.3e-56 222.6 145 75.2
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.6e-55 219.5 256 49.6
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.1e-55 218.4 164 68.3
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 4.9e-52 209.1 127 81.9
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.5e-48 196.8 151 62.9
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 3.1e-46 189.9 163 61.3
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 9.3e-43 178.3 153 58.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.0e-41 173.3 332 34.0
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 6.2e-39 165.6 301 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 6.4e-36 155.6 219 38.4
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.6e-34 151.0 121 62.8
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 4.3e-32 142.9 217 35.0
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 5.6e-32 142.5 119 56.3
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.1e-31 140.6 120 63.3
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 6.2e-31 139.0 84 79.8
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.8e-30 137.5 316 29.7
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-25 120.2 169 45.6
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.6e-23 114.4 96 66.7
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.0e-20 105.1 88 56.8
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.3e-20 104.8 85 67.1
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 2.9e-20 103.6 74 67.6
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 6.5e-20 102.4 74 67.6
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 6.5e-20 102.4 74 67.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.3e-19 98.6 66 66.7
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.5e-16 91.3 77 58.4
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 4.3e-16 89.7 61 73.8
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 4.1e-14 83.2 58 70.7
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 6.5e-12 75.9 61 65.6
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 4.2e-11 73.2 62 61.3


User provided reference genes

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