Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.3e-86 322.4 188 100.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.8e-70 267.3 206 83.5
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 9.2e-59 230.7 164 86.6
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.9e-49 198.7 164 78.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.0e-41 174.1 157 71.3
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.0e-41 174.1 147 76.2
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.3e-41 173.7 172 67.4
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 9.5e-40 167.5 181 65.7
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 3.6e-39 165.6 147 75.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.1e-38 164.1 153 72.5
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 5.8e-37 158.3 147 72.8
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.3e-36 157.1 180 65.6
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.7e-36 156.8 153 71.9
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.2e-36 156.4 153 69.3
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.4e-36 154.8 179 62.0
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 7.1e-35 151.4 179 60.3
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 2.1e-34 149.8 179 60.9
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 8.6e-33 144.4 179 60.9
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.1e-32 144.1 148 67.6
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.9e-32 143.3 153 68.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 9.5e-32 141.0 187 58.3
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.6e-31 139.0 218 53.7
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 2.4e-30 136.3 112 81.2
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 3.1e-30 136.0 176 59.1
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.1e-30 136.0 108 81.5
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 3.1e-30 136.0 112 79.5
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.4e-29 132.5 153 63.4
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.4e-29 132.1 153 63.4
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.9e-28 129.4 179 59.2
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 2.9e-28 129.4 176 57.4
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.9e-28 128.6 176 56.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.9e-27 126.7 153 60.1
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.4e-27 126.3 176 55.7
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.2e-27 125.9 181 56.4
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 4.1e-27 125.6 153 62.1
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.1e-27 124.8 100 83.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 7.1e-27 124.8 178 57.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.6e-26 123.6 182 55.5
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 6.0e-26 121.7 179 55.9
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.3e-25 120.6 119 73.9
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.7e-25 120.2 150 56.7
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.3e-25 119.8 152 57.2
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.1e-25 118.6 112 74.1
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 6.6e-25 118.2 158 58.9
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 6.6e-25 118.2 124 68.5
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.6e-25 117.9 136 64.0
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.6e-25 117.9 187 51.9
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.1e-24 117.5 158 58.9
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.9e-24 116.7 150 60.7
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.9e-24 116.7 150 60.7
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.9e-24 116.7 100 80.0
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 2.5e-24 116.3 148 62.2
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.3e-24 115.9 136 58.1
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 3.3e-24 115.9 98 82.7
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.2e-23 114.0 101 79.2
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.6e-23 113.6 152 61.2
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 3.6e-23 112.5 153 60.1
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.6e-23 112.5 148 53.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.7e-23 112.1 158 60.8
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 8.1e-23 111.3 174 55.7
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.1e-22 110.9 163 54.6
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-22 110.9 99 81.8
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.4e-22 110.5 161 54.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.4e-22 110.5 151 58.3
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.8e-22 110.2 146 59.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 4.0e-22 109.0 129 60.5
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.2e-22 108.6 134 65.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.2e-22 108.6 142 53.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 6.9e-22 108.2 101 79.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.2e-21 107.5 127 60.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.6e-21 106.3 105 73.3
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.6e-21 106.3 100 78.0
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 7.6e-21 104.8 99 77.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 9.9e-21 104.4 100 77.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.7e-20 103.6 128 57.0
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.8e-20 102.4 142 52.8
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 4.9e-20 102.1 153 57.5
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 4.9e-20 102.1 188 46.3
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 6.4e-20 101.7 125 67.2
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.1e-19 100.9 134 55.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.1e-19 100.9 58 86.2
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 2.4e-19 99.8 150 55.3
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.2e-19 99.4 122 58.2
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.2e-19 99.0 88 77.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 5.4e-19 98.6 106 73.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 5.4e-19 98.6 106 73.6
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 7.1e-19 98.2 101 72.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 7.1e-19 98.2 101 72.3
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 2.1e-18 96.7 129 57.4
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.7e-18 96.3 103 62.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.7e-18 96.3 103 62.1
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 4.6e-18 95.5 97 75.3
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.0e-18 95.1 103 62.1
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.3e-17 94.0 103 61.2
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.7e-17 93.6 162 51.9
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.3e-17 93.2 103 70.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 5.1e-17 92.0 97 72.2
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.6e-17 91.7 134 50.7
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 8.7e-17 91.3 99 72.7
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 8.7e-17 91.3 99 72.7
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.7e-17 91.3 120 59.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.5e-16 90.5 159 54.7
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.9e-16 90.1 119 63.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.5e-16 89.7 97 72.2
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 3.3e-16 89.4 119 63.9
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.3e-16 89.4 189 45.0
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 4.3e-16 89.0 99 71.7
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.6e-16 88.6 143 52.4
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 1.6e-15 87.0 105 69.5
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.8e-15 86.3 178 47.8
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.4e-14 83.2 179 42.5
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.4e-14 83.2 134 47.0
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.6e-13 79.7 86 64.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.6e-13 79.7 86 64.0
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 3.4e-13 79.3 86 64.0
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 3.4e-13 79.3 92 60.9
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.4e-13 79.3 86 64.0
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.4e-13 79.3 102 53.9
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.5e-13 79.0 135 50.4
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 7.6e-13 78.2 122 57.4
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 9.9e-13 77.8 87 60.9
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 9.9e-13 77.8 87 60.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.3e-12 77.4 99 60.6
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.7e-12 77.0 92 59.8
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.7e-12 77.0 92 59.8
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.2e-12 76.6 88 67.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 6.4e-12 75.1 86 68.6
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-11 74.3 91 62.6
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-11 73.9 142 45.8
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 2.4e-11 73.2 120 54.2
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.2e-11 72.8 95 57.9
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 4.2e-11 72.4 101 56.4
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.1e-11 71.6 118 53.4
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.6e-10 70.5 105 59.0
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.6e-10 70.5 174 43.7
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.6e-10 68.9 140 40.7
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.3e-09 67.4 67 67.2
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.3e-09 66.6 67 71.6
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.0e-09 66.2 67 67.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.7e-09 64.7 109 57.8
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.1e-08 64.3 85 49.4
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.5e-08 63.9 105 58.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.5e-08 63.2 152 42.8
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 3.3e-08 62.8 105 53.3
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 2.8e-07 59.7 88 55.7
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 2.8e-07 59.7 99 40.4
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.8e-07 58.9 67 55.2
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.1e-06 57.8 67 58.2
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.1e-06 57.8 135 42.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.4e-06 57.4 138 44.2
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 2.4e-06 56.6 100 52.0
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 2.4e-06 56.6 59 59.3
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 3.1e-06 56.2 124 44.4
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 3.1e-06 56.2 115 46.1
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 5.3e-06 55.5 93 41.9
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 9.0e-06 54.7 153 41.2


User provided reference genes

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