Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.1e-159 567.0 381 100.0
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 3.6e-62 243.0 305 56.1
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.1e-58 231.5 311 54.3
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 7.1e-50 202.2 307 55.7
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 5.2e-45 186.0 311 47.6
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 2.0e-44 184.1 307 50.2
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.3e-43 181.4 303 45.9
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 4.9e-43 179.5 300 50.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 6.0e-41 172.6 298 46.6
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 6.6e-40 169.1 296 43.2
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 2.5e-39 167.2 299 46.8
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 5.6e-39 166.0 304 42.8
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.3e-38 164.9 312 50.3
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 1.3e-38 164.9 310 45.5
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 2.8e-38 163.7 303 42.9
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 3.6e-38 163.3 301 48.2
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.4e-37 161.4 304 41.1
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 3.1e-37 160.2 306 40.8
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.0e-36 157.5 306 40.2
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 3.4e-36 156.8 305 40.0
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 4.4e-36 156.4 297 42.4
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 2.9e-35 153.7 305 44.6
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 4.9e-35 152.9 305 44.3
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 6.4e-35 152.5 265 42.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 2.4e-34 150.6 299 43.1
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 9.3e-34 148.7 297 39.4
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.6e-33 147.9 306 45.8
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 3.5e-33 146.7 316 41.8
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 7.9e-33 145.6 301 43.9
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.7e-32 144.4 308 41.6
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 8.7e-32 142.1 301 40.9
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.1e-31 141.7 295 37.3
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.5e-31 141.4 298 38.6
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.5e-31 140.6 300 36.7
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 4.3e-31 139.8 301 37.5
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 4.3e-31 139.8 298 41.3
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 9.6e-31 138.7 302 43.4
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 9.6e-31 138.7 300 42.7
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.6e-30 137.9 302 39.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 4.8e-30 136.3 304 37.2
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 1.1e-29 135.2 308 45.8
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.1e-29 135.2 304 38.2
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 1.4e-29 134.8 299 39.1
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.8e-29 134.4 300 37.7
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 3.1e-29 133.7 300 43.3
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.3e-29 132.9 306 46.1
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 5.3e-29 132.9 301 38.2
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.5e-28 131.3 307 37.1
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.6e-28 130.6 313 39.6
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 9.9e-28 128.6 311 38.6
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 9.9e-28 128.6 298 47.0
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.3e-27 128.3 308 45.1
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 3.8e-27 126.7 301 39.5
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.8e-27 126.7 305 37.4
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 4.9e-27 126.3 302 34.4
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 4.9e-27 126.3 259 35.9
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 6.4e-27 125.9 306 45.4
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 6.4e-27 125.9 303 38.3
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.1e-26 125.2 304 40.1
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.4e-26 124.8 325 39.4
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 1.9e-26 124.4 306 45.4
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 3.2e-26 123.6 309 39.5
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 3.2e-26 123.6 303 40.6
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 4.2e-26 123.2 308 41.6
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.1e-25 120.9 297 43.1
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 2.1e-25 120.9 302 43.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.1e-25 120.9 302 43.4
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 4.6e-25 119.8 336 33.6
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 4.6e-25 119.8 301 35.9
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.8e-24 117.9 307 39.4
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 2.3e-24 117.5 303 38.0
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.1e-23 115.2 302 42.1
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.6e-23 112.8 312 33.7
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.7e-22 110.2 304 36.2
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 4.0e-21 106.7 297 39.4
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 5.3e-21 106.3 315 35.6
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.3e-19 101.7 346 33.2
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 2.9e-19 100.5 296 42.6
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 8.4e-19 99.0 195 35.9
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.4e-18 98.2 307 32.9
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.2e-18 96.7 126 48.4
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.2e-18 96.7 307 31.6
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 1.0e-16 92.0 308 35.7
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.0e-16 90.5 300 31.0
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 3.0e-16 90.5 242 35.5
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 3.9e-16 90.1 307 31.3
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 6.7e-16 89.4 310 33.5
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.9e-15 87.8 305 33.4
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 3.3e-15 87.0 306 33.7
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 2.1e-14 84.3 298 29.9
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 4.8e-14 83.2 302 29.1
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.2e-12 78.6 85 58.8
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 2.6e-12 77.4 304 28.6
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 4.5e-12 76.6 308 31.2
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 7.6e-12 75.9 301 29.6
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.7e-11 74.7 84 50.0
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 2.9e-11 73.9 308 36.4
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.4e-10 71.6 246 35.8
Actinidia30125 Actinidia chinensis HOM05D007706 ORTHO05D009593 2.5e-10 70.9 63 63.5
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 2.5e-10 70.9 301 35.9
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 3.2e-10 70.5 79 48.1
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 1.6e-09 68.2 78 42.3
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.6e-09 68.2 215 29.8
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.1e-09 66.2 301 30.6
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.1e-09 66.2 309 29.8
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 7.9e-09 65.9 45 68.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 7.9e-09 65.9 49 61.2
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.3e-08 65.1 81 42.0
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.3e-08 64.3 127 37.8
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 6.7e-08 62.8 36 75.0
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 8.7e-08 62.4 216 28.2
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 8.7e-08 62.4 82 53.7
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.5e-07 61.6 315 31.1
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.9e-07 61.2 113 32.7
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 3.3e-07 60.5 39 64.1
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 3.3e-07 60.5 320 26.9
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 4.3e-07 60.1 82 40.2
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 7.4e-07 59.3 36 69.4
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 9.7e-07 58.9 113 32.7
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.2e-06 57.8 88 42.0
Hund00522 Selenicereus undatus HOM05D001903 ORTHO05D001847 6.3e-06 56.2 43 58.1
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 8.2e-06 55.8 91 35.2
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 8.2e-06 55.8 80 40.0


User provided reference genes

Program Settings