Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.1e-170 602.4 335 100.0
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.3e-169 599.0 335 99.4
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.5e-101 372.5 362 68.8
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.2e-90 337.4 339 64.6
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 2.6e-88 329.7 393 54.7
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.2e-85 320.9 374 61.0
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 7.3e-75 285.0 360 58.6
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 2.0e-56 223.8 347 48.7
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 3.0e-52 209.9 323 50.8
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 5.1e-52 209.1 350 45.1
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.1e-49 201.4 356 41.6
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.5e-48 197.6 238 51.3
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 3.4e-48 196.4 337 43.9
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 7.6e-48 195.3 281 49.8
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 8.4e-47 191.8 348 43.1
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 2.1e-45 187.2 360 40.6
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.0e-44 184.9 352 40.3
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 1.3e-44 184.5 368 41.6
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 2.3e-44 183.7 358 39.7
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 8.7e-44 181.8 360 40.0
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.1e-43 181.4 353 40.2
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 4.3e-43 179.5 352 38.1
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.8e-42 176.8 352 38.9
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 4.8e-42 176.0 380 37.1
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 6.9e-41 172.2 357 39.2
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 5.8e-40 169.1 385 35.1
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 9.9e-40 168.3 351 37.6
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 1.3e-39 167.9 316 44.6
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 2.2e-39 167.2 341 36.1
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 8.4e-39 165.2 190 52.1
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.4e-38 164.5 333 34.8
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 1.9e-38 164.1 344 36.3
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 9.3e-38 161.8 347 39.5
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 2.1e-37 160.6 274 40.5
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.0e-36 158.3 274 42.0
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 1.8e-36 157.5 351 39.6
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 6.7e-36 155.6 274 40.1
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 8.7e-36 155.2 272 41.5
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.9e-35 154.1 278 41.4
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 9.6e-35 151.8 300 38.0
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.3e-34 151.4 312 36.5
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 2.1e-34 150.6 304 37.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.8e-34 150.2 219 47.0
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 1.4e-33 147.9 337 36.5
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.1e-33 146.7 305 39.3
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 5.3e-33 146.0 320 34.1
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 9.0e-33 145.2 319 35.7
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 2.0e-32 144.1 427 34.9
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 2.9e-31 140.2 239 42.7
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 2.9e-31 140.2 365 34.2
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 2.5e-30 137.1 344 37.2
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.2e-29 134.8 214 41.6
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 3.5e-29 133.3 311 36.0
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 1.3e-28 131.3 350 34.0
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.3e-28 131.3 304 45.7
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 3.9e-28 129.8 300 36.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 3.3e-27 126.7 365 34.0
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 2.8e-26 123.6 340 34.1
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.1e-25 121.7 272 36.8
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 4.1e-25 119.8 268 38.4
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.3e-25 119.4 291 34.0
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 2.6e-24 117.1 349 33.8
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.4e-22 111.3 305 35.1
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 3.2e-22 110.2 263 35.4
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.0e-20 105.1 212 35.8
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.4e-20 104.8 255 39.2
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 5.7e-19 99.4 337 31.2
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 9.7e-19 98.6 277 35.4
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 2.2e-18 97.4 157 43.9
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 8.2e-18 95.5 276 33.7
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 8.2e-18 95.5 285 33.3
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 1.4e-17 94.7 303 33.0
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.4e-16 90.1 278 33.8
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.3e-15 88.2 149 38.3
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.1e-14 85.1 60 68.3
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 4.2e-14 83.2 113 46.9
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 5.1e-12 76.3 104 45.2
PGR142G3672 Punica granatum HOM05D007421 ORTHO05D009203 4.4e-11 73.2 226 32.7
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 1.3e-10 71.6 177 36.7
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 3.7e-10 70.1 72 48.6
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 3.7e-10 70.1 72 48.6
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 8.2e-10 68.9 86 47.7
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.8e-09 67.8 78 50.0
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 7.0e-09 65.9 87 47.1
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.2e-08 65.1 140 38.6
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 3.4e-08 63.5 35 71.4
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.4e-08 63.5 83 43.4
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 4.5e-08 63.2 137 35.8
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 4.5e-08 63.2 137 35.8
Lalb_Chr12g0208501 Lupinus albus HOM05D007421 ORTHO05D009203 7.7e-08 62.4 194 33.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.7e-08 62.4 38 63.2
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 7.7e-08 62.4 38 63.2
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 1.0e-07 62.0 83 42.2
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 2.9e-07 60.5 38 60.5
Prupe.3G149200 Prunus persica HOM05D002710 ORTHO05D002905 2.9e-07 60.5 210 26.7
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 6.5e-07 59.3 34 67.6
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 8.5e-07 58.9 88 44.3
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.1e-06 58.5 32 65.6
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 3.2e-06 57.0 116 33.6
Ca_02335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 9.4e-06 55.5 54 48.1


User provided reference genes

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