Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-73 279.3 148 100.0
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.0e-73 278.5 148 99.3
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.3e-72 275.0 148 98.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 6.7e-65 250.8 148 87.8
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 3.3e-64 248.4 148 86.5
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.1e-62 243.4 145 86.2
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 7.0e-62 240.7 148 83.1
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 6.5e-60 234.2 149 81.9
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 8.5e-60 233.8 146 83.6
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 8.5e-60 233.8 146 83.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.5e-59 233.0 147 83.7
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.5e-59 233.0 149 81.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 146 82.9
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 142 83.8
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.9e-59 232.6 146 84.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 81.8
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.9e-59 232.6 142 83.8
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.9e-59 232.6 149 82.6
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.5e-59 232.3 149 81.2
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.5e-59 232.3 149 81.2
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.5e-59 232.3 148 82.4
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.5e-59 232.3 149 82.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 3.2e-59 231.9 146 84.2
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.2e-59 231.9 143 83.9
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 4.2e-59 231.5 150 81.3
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 4.2e-59 231.5 146 83.6
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 7.2e-59 230.7 147 83.0
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 7.2e-59 230.7 143 83.9
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 9.4e-59 230.3 143 83.9
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-58 229.9 149 80.5
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.2e-58 229.9 146 83.6
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.6e-58 229.6 149 80.5
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 2.1e-58 229.2 142 82.4
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.1e-58 229.2 145 82.1
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 3.6e-58 228.4 139 84.2
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 79.9
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 4.7e-58 228.0 149 78.5
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.7e-58 228.0 149 79.9
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 79.9
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 6.1e-58 227.6 145 80.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 6.1e-58 227.6 143 82.5
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 8.0e-58 227.3 146 80.8
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 8.0e-58 227.3 147 77.6
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.0e-57 226.9 143 81.1
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.0e-57 226.9 147 78.9
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.4e-57 226.5 145 80.0
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.4e-57 226.5 149 79.2
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.4e-57 226.5 144 81.9
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 149 79.2
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 80.4
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 78.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.3e-57 225.7 146 79.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 2.3e-57 225.7 144 81.9
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 3.0e-57 225.3 148 80.4
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 3.0e-57 225.3 143 81.8
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 3.0e-57 225.3 148 80.4
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 4.0e-57 224.9 146 79.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 4.0e-57 224.9 141 81.6
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 6.7e-57 224.2 134 85.8
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 8.8e-57 223.8 146 78.8
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 8.8e-57 223.8 140 82.1
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.2e-56 223.4 149 77.9
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 79.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 79.3
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 79.3
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.2e-56 223.4 144 79.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.5e-56 223.0 148 79.7
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.0e-56 222.6 149 78.5
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 2.0e-56 222.6 143 80.4
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.6e-56 222.2 146 78.1
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.6e-56 222.2 145 78.6
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.6e-56 222.2 145 78.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 3.3e-56 221.9 148 76.4
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.3e-56 221.9 146 79.5
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.4e-56 221.5 145 79.3
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 5.7e-56 221.1 141 78.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 5.7e-56 221.1 148 77.0
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.3e-55 219.9 147 77.6
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.7e-55 219.5 146 78.1
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.8e-55 218.8 145 77.2
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 3.7e-55 218.4 148 75.7
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.3e-55 217.6 145 77.2
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 8.2e-55 217.2 145 77.2
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.8e-54 216.1 143 78.3
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.8e-54 216.1 143 78.3
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.8e-54 216.1 145 75.9
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 4.1e-54 214.9 145 76.6
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.1e-54 214.9 145 76.6
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 5.3e-54 214.5 134 81.3
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 7.0e-54 214.2 140 80.0
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 9.1e-54 213.8 140 80.0
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.6e-53 213.0 149 77.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.7e-53 212.2 146 76.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 3.5e-53 211.8 145 74.5
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 7.7e-53 210.7 144 76.4
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.7e-53 210.7 146 75.3
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 75.2
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 72.4
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.2e-52 209.1 144 76.4
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.9e-52 208.8 124 86.3
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 2.9e-52 208.8 141 78.7
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 4.2e-51 204.9 134 79.9
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.2e-50 203.4 146 72.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 4.7e-50 201.4 149 69.1
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 6.8e-49 197.6 149 68.5
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 8.8e-49 197.2 148 67.6
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 8.8e-49 197.2 144 70.8
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.4e-46 189.9 149 67.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.4e-46 189.9 150 66.7
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.1e-46 187.2 138 67.4
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.6e-45 186.4 139 68.3
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.0e-45 186.0 120 79.2
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.7e-45 185.7 140 67.9
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.5e-45 185.3 141 67.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.5e-45 184.9 139 67.6
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.5e-45 184.9 139 67.6
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 5.9e-45 184.5 138 68.8
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 5.9e-45 184.5 138 68.8
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 5.9e-45 184.5 138 68.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 7.7e-45 184.1 139 67.6
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.7e-44 183.0 137 67.9
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 1.7e-44 183.0 116 81.9
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 2.9e-44 182.2 149 63.8
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 2.9e-44 182.2 134 67.9
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 5.0e-44 181.4 136 67.6
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 2.5e-43 179.1 149 65.1
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 4.2e-43 178.3 144 65.3
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 9.5e-43 177.2 149 64.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.0e-41 173.7 135 68.1
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.0e-41 173.7 135 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.0e-41 171.8 145 60.0
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 6.8e-41 171.0 144 63.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 5.7e-40 167.9 143 60.8
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.1e-38 163.7 149 59.1
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.3e-36 156.8 138 58.7
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.0e-33 147.1 133 57.9
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.0e-33 145.2 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.9e-31 138.3 115 57.4
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.7e-29 132.5 138 54.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.4e-24 115.2 90 65.6
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.1e-22 110.5 109 58.7
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 4.1e-22 108.6 135 42.2
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 9.2e-22 107.5 95 61.1
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.0e-20 104.0 138 43.5
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.1e-14 82.0 86 47.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.6e-13 80.1 46 82.6


User provided reference genes

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