Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048520 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.4e-49 198.4 127 100.0
CSS0009360 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.5e-33 146.4 124 65.3
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 1.5e-09 66.6 67 85.1
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 1.5e-09 66.6 67 85.1
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 2.0e-09 66.2 67 55.2
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 2.0e-09 66.2 67 65.7
Manes.06G090201 Manihot esculenta HOM05D005637 ORTHO05D006983 2.6e-09 65.9 67 80.6
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.4e-09 65.5 33 87.9
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 5.9e-09 64.7 67 82.1
arahy.Tifrunner.gnm1.ann1.DXDM30 Arachis hypogaea HOM05D005637 ORTHO05D006983 7.7e-09 64.3 69 52.2
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 1.0e-08 63.9 67 58.2
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 1.0e-08 63.9 68 61.8
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 1.0e-08 63.9 67 64.2
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 1.0e-08 63.9 68 63.2
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 1.0e-08 63.9 68 82.4
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 1.3e-08 63.5 32 87.5
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 1.7e-08 63.2 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.9e-08 62.4 68 80.9
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 2.9e-08 62.4 67 70.1
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 2.9e-08 62.4 67 70.1
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 2.9e-08 62.4 30 93.3
Nitab4.5_0001195g0050 Nicotiana tabacum HOM05D005637 ORTHO05D006983 2.9e-08 62.4 73 79.5
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 2.9e-08 62.4 30 93.3
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 2.9e-08 62.4 30 93.3
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 2.9e-08 62.4 30 93.3
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 3.8e-08 62.0 31 87.1
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 3.8e-08 62.0 67 59.7
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 3.8e-08 62.0 67 49.3
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 5.0e-08 61.6 67 58.2
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 5.0e-08 61.6 31 87.1
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 5.0e-08 61.6 31 87.1
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 5.0e-08 61.6 31 87.1
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 5.0e-08 61.6 31 87.1
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 5.0e-08 61.6 31 87.1
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 5.0e-08 61.6 67 82.1
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 6.5e-08 61.2 68 58.8
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 6.5e-08 61.2 31 83.9
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 6.5e-08 61.2 31 87.1
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 6.5e-08 61.2 31 83.9
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 6.5e-08 61.2 30 90.0
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 6.5e-08 61.2 68 66.2
Aa31LG7G8540 Aethionema arabicum HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 8.5e-08 60.8 67 47.8
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 8.5e-08 60.8 30 86.7
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 1.1e-07 60.5 67 80.6
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 1.1e-07 60.5 32 81.2
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 1.4e-07 60.1 31 83.9
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 1.4e-07 60.1 31 83.9
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 1.9e-07 59.7 68 70.6
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 1.9e-07 59.7 67 80.6
BcaB03g12359 Brassica carinata HOM05D005637 ORTHO05D006983 2.5e-07 59.3 30 83.3
BcaB04g17310 Brassica carinata HOM05D005637 ORTHO05D006983 2.5e-07 59.3 30 83.3
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 2.5e-07 59.3 31 83.9
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 2.5e-07 59.3 68 63.2
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 3.2e-07 58.9 68 83.8
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 3.2e-07 58.9 68 83.8
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 3.2e-07 58.9 32 84.4
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 3.2e-07 58.9 68 83.8
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 4.2e-07 58.5 35 71.4
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 4.2e-07 58.5 30 83.3
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 4.2e-07 58.5 71 69.0
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 5.5e-07 58.2 30 83.3
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 5.5e-07 58.2 67 80.6
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 7.2e-07 57.8 31 83.9
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 7.2e-07 57.8 28 92.9
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 7.2e-07 57.8 31 83.9
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 7.2e-07 57.8 31 83.9
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 7.2e-07 57.8 68 69.1
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 9.4e-07 57.4 30 86.7
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 1.2e-06 57.0 67 79.1
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 1.2e-06 57.0 67 79.1
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 1.6e-06 56.6 28 89.3
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 2.1e-06 56.2 27 92.6
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 2.1e-06 56.2 27 92.6
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 2.1e-06 56.2 27 92.6
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 2.1e-06 56.2 27 92.6
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 2.1e-06 56.2 27 92.6
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 2.7e-06 55.8 27 88.9
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 3.6e-06 55.5 30 76.7


User provided reference genes

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