Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048512 Camellia sinensis var. sinensis HOM05D006464 ORTHO05D007923 0.0e+00 1086.6 584 100.0
CSS0002738 Camellia sinensis var. sinensis HOM05D006464 ORTHO05D007923 3.4e-221 771.9 746 64.7
vmacro11686 Vaccinium macrocarpon HOM05D006464 ORTHO05D007923 1.3e-215 753.4 746 62.6
Gohir.D10G186900 Gossypium hirsutum HOM05D006464 ORTHO05D007923 2.2e-215 752.7 744 62.1
Gorai.011G209700 Gossypium raimondii HOM05D006464 ORTHO05D007923 2.8e-215 752.3 744 62.1
Rhsim06G0243700 Rhododendron simsii HOM05D006464 ORTHO05D007923 2.8e-215 752.3 746 62.6
CiPaw.11G057900 Carya illinoinensis HOM05D006464 ORTHO05D007923 1.9e-211 739.6 746 61.1
Cfa009889 Carpinus fangiana HOM05D006464 ORTHO05D007923 1.6e-210 736.5 746 60.9
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 1.6e-210 736.5 745 61.2
Haze_23251 Corylus avellana HOM05D006464 ORTHO05D007923 1.4e-209 733.4 746 60.5
Cc03_g09090 Coffea canephora HOM05D006464 ORTHO05D007923 3.9e-209 731.9 746 60.6
QL03p065678 Quercus lobata HOM05D006464 ORTHO05D007923 3.9e-209 731.9 745 60.4
QL93p0310_0071 Quercus lobata HOM05D006464 ORTHO05D007923 3.9e-209 731.9 745 60.3
QL04p093513 Quercus lobata HOM05D006464 ORTHO05D007923 5.1e-209 731.5 745 60.3
Manes.14G157747 Manihot esculenta HOM05D006464 ORTHO05D007923 2.5e-208 729.2 746 60.3
TWI36G0676 Tripterygium wilfordii HOM05D006464 ORTHO05D007923 9.7e-208 727.2 742 60.4
CSS0045056 Camellia sinensis var. sinensis HOM05D006464 ORTHO05D007923 2.8e-207 725.7 746 62.5
Psat7g088600 Pisum sativum HOM05D006464 ORTHO05D007923 3.1e-206 722.2 746 59.7
Sopen08g026650 Solanum pennellii HOM05D006464 ORTHO05D007923 2.6e-205 719.2 747 59.8
MSTRG.16085 Avicennia marina HOM05D006464 ORTHO05D007923 3.4e-205 718.8 746 59.2
PGSC0003DMG400026230 Solanum tuberosum HOM05D006464 ORTHO05D007923 3.4e-205 718.8 747 59.7
CAN.G1856.7 Capsicum annuum HOM05D006464 ORTHO05D007923 4.5e-205 718.4 746 59.5
Lj2C11T2 Lonicera japonica HOM05D006464 ORTHO05D007923 4.5e-205 718.4 746 59.8
Lj4g0005133 Lotus japonicus HOM05D006464 ORTHO05D007923 4.5e-205 718.4 741 59.6
TAR629G0921 Trochodendron aralioides HOM05D006464 ORTHO05D007923 5.9e-205 718.0 746 59.2
Solyc08g078150.1 Solanum lycopersicum HOM05D006464 ORTHO05D007923 1.3e-204 716.8 747 59.7
Potri.010G173400 Populus trichocarpa HOM05D006464 ORTHO05D007923 8.5e-204 714.1 746 59.1
Gohir.A10G180000 Gossypium hirsutum HOM05D006464 ORTHO05D007923 1.1e-203 713.8 746 59.1
Ca_18242_v3 Cicer arietinum L. HOM05D006464 ORTHO05D007923 1.4e-203 713.4 744 59.1
Cpa.g.sc32.87 Carica papaya HOM05D006464 ORTHO05D007923 5.5e-203 711.4 745 58.8
DCAR_013714 Daucus carota HOM05D006464 ORTHO05D007923 5.5e-203 711.4 745 59.1
Nn2g12307 Nelumbo nucifera HOM05D006464 ORTHO05D007923 7.2e-203 711.1 746 58.8
Sabra10G0133300 Salix brachista HOM05D006464 ORTHO05D007923 7.2e-203 711.1 746 59.1
Medtr4g094688 Medicago truncatula HOM05D006464 ORTHO05D007923 2.1e-202 709.5 745 58.8
Duzib114G0960 Durio zibethinus HOM05D006464 ORTHO05D007923 2.7e-202 709.1 746 58.3
RcHm_v2.0_Chr5g0023761 Rosa chinensis HOM05D006464 ORTHO05D007923 2.7e-202 709.1 740 59.3
Lalb_Chr07g0188381 Lupinus albus HOM05D006464 ORTHO05D007923 3.6e-202 708.8 744 58.9
Thecc.10G179300 Theobroma cacao HOM05D006464 ORTHO05D007923 3.6e-202 708.8 746 58.4
Glyma.19G055700 Glycine max HOM05D006464 ORTHO05D007923 7.9e-202 707.6 746 59.0
Oeu033075.1 Olea europaea HOM05D006464 ORTHO05D007923 1.4e-201 706.8 746 58.7
Prupe.4G129400 Prunus persica HOM05D006464 ORTHO05D007923 1.8e-201 706.4 746 59.2
MELO3C008113.2 Cucumis melo HOM05D006464 ORTHO05D007923 3.9e-201 705.3 600 62.8
Atru.chr4.442 Acer truncatum HOM05D006464 ORTHO05D007923 1.5e-200 703.4 740 58.8
Ciclev10004323m.g Citrus clementina HOM05D006464 ORTHO05D007923 5.7e-200 701.4 740 58.4
THA.LOC104812381 Tarenaya hassleriana HOM05D006464 ORTHO05D007923 5.7e-200 701.4 747 57.8
FAN25G3388 Fragaria x ananassa HOM05D006464 ORTHO05D007923 7.4e-200 701.0 740 58.5
AUR62037646 Chenopodium quinoa HOM05D006464 ORTHO05D007923 9.7e-200 700.7 745 58.1
arahy.Tifrunner.gnm1.ann1.K4I1Z6 Arachis hypogaea HOM05D006464 ORTHO05D007923 2.2e-199 699.5 742 58.9
CsaV3_2G033410 Cucumis sativus L. HOM05D006464 ORTHO05D007923 2.2e-199 699.5 744 58.2
FAN16G1625 Fragaria x ananassa HOM05D006464 ORTHO05D007923 3.7e-199 698.7 746 58.2
MD05G1236700 Malus domestica HOM05D006464 ORTHO05D007923 3.7e-199 698.7 746 58.6
Lsat_1_v5_gn_7_110921 Lactuca sativa HOM05D006464 ORTHO05D007923 6.3e-199 698.0 741 58.6
PSO541G0939 Papaver somniferum HOM05D006464 ORTHO05D007923 6.3e-199 698.0 744 57.7
VMungo0464G1450 Vigna mungo HOM05D006464 ORTHO05D007923 6.3e-199 698.0 740 58.8
FvH4_3g14450 Fragaria vesca HOM05D006464 ORTHO05D007923 1.8e-198 696.4 746 57.9
Aqoxy1G01398 Aquilegia oxysepala HOM05D006464 ORTHO05D007923 4.1e-198 695.3 742 58.2
FAN11G0790 Fragaria x ananassa HOM05D006464 ORTHO05D007923 4.1e-198 695.3 746 57.8
SGA_v2.0_scaffold7G03621 Striga asiatica HOM05D006464 ORTHO05D007923 7.0e-198 694.5 746 57.4
Phvul.004G057900 Phaseolus vulgaris HOM05D006464 ORTHO05D007923 9.1e-198 694.1 740 58.5
PGR031G1485 Punica granatum HOM05D006464 ORTHO05D007923 3.5e-197 692.2 746 58.2
Thhalv10018121m.g Eutrema salsugineum HOM05D006464 ORTHO05D007923 5.9e-197 691.4 747 56.8
COL.COLO4_19419 Corchorus olitorius HOM05D006464 ORTHO05D007923 7.7e-197 691.0 746 57.4
ClCG11G008250 Citrullus lanatus HOM05D006464 ORTHO05D007923 1.7e-196 689.9 744 57.5
SalBow8G2731 Salvia bowleyana HOM05D006464 ORTHO05D007923 1.7e-196 689.9 745 57.3
AL2G40100 Arabidopsis lyrata HOM05D006464 ORTHO05D007923 5.0e-196 688.3 747 56.5
AT1G79490 Arabidopsis thaliana HOM05D006464 ORTHO05D007923 2.5e-195 686.0 747 56.4
Hma1.2p1_0151F.1_g067100 Hydrangea macrophylla HOM05D006464 ORTHO05D007923 2.5e-195 686.0 730 59.6
Sc19g0006030 Simmondsia chinensis HOM05D006464 ORTHO05D007923 3.2e-195 685.6 739 57.8
CARHR073150 Cardamine hirsuta HOM05D006464 ORTHO05D007923 4.2e-195 685.3 747 56.1
PSO675G4723 Papaver somniferum HOM05D006464 ORTHO05D007923 9.4e-195 684.1 744 57.0
Sp5g34540 Schrenkiella parvula HOM05D006464 ORTHO05D007923 3.6e-194 682.2 747 56.5
HanXRQChr10g0283251 Helianthus annuus HOM05D006464 ORTHO05D007923 6.1e-194 681.4 748 57.2
Ah.16g106150 Amaranthus hybridus HOM05D006464 ORTHO05D007923 8.0e-194 681.0 742 57.0
Sed0008800 Sechium edule HOM05D006464 ORTHO05D007923 1.0e-193 680.6 746 56.8
unitig_749.g13442 Utricularia gibba HOM05D006464 ORTHO05D007923 5.2e-193 678.3 742 56.6
C06p29860 Brassica napus HOM05D006464 ORTHO05D007923 1.5e-192 676.8 747 55.6
BolC6t38148H Brassica oleracea HOM05D006464 ORTHO05D007923 1.5e-192 676.8 747 55.6
AUR62041047 Chenopodium quinoa HOM05D006464 ORTHO05D007923 2.0e-192 676.4 742 57.0
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 2.6e-192 676.0 741 58.2
BraA07t30357Z Brassica rapa HOM05D006464 ORTHO05D007923 3.3e-192 675.6 749 55.4
A07p27120 Brassica napus HOM05D006464 ORTHO05D007923 5.7e-192 674.9 748 55.3
Nitab4.5_0020695g0010 Nicotiana tabacum HOM05D006464 ORTHO05D007923 8.2e-191 671.0 712 59.1
Aa31LG4G1530 Aethionema arabicum HOM05D006464 ORTHO05D007923 1.1e-190 670.6 747 56.2
BcaB02g07217 Brassica carinata HOM05D006464 ORTHO05D007923 1.4e-190 670.2 747 55.4
GSVIVG01020873001 Vitis vinifera HOM05D006464 ORTHO05D007923 5.5e-187 658.3 736 56.8
Migut.M01509 Erythranthe guttata HOM05D006464 ORTHO05D007923 1.2e-186 657.1 712 57.3
FAN21G2631 Fragaria x ananassa HOM05D006464 ORTHO05D007923 6.1e-186 654.8 735 56.3
Eucgr.H04993 Eucalyptus grandis HOM05D006464 ORTHO05D007923 9.7e-184 647.5 737 55.8
Peaxi162Scf00207g00514 Petunia axillaris HOM05D006464 ORTHO05D007923 3.7e-183 645.6 700 58.1
ECA236G4525 Erigeron canadensis HOM05D006464 ORTHO05D007923 4.5e-181 638.6 708 57.3
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 5.9e-181 638.3 745 54.1
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.3e-180 637.1 746 54.3
SHI18012 Sapria himalayana HOM05D006464 ORTHO05D007923 1.8e-177 626.7 733 54.2
Carub.0002s2635 Capsella rubella HOM05D006464 ORTHO05D007923 7.0e-174 614.8 712 54.6
BcaC08g45352 Brassica carinata HOM05D006464 ORTHO05D007923 3.4e-168 595.9 725 53.0
BcaC08g45354 Brassica carinata HOM05D006464 ORTHO05D007923 4.9e-167 592.0 713 52.9
ATR0763G028 Amborella trichopoda HOM05D006464 ORTHO05D007923 2.3e-156 556.6 737 51.0
Hma1.2p1_0151F.1_g067090 Hydrangea macrophylla HOM05D006464 ORTHO05D007923 3.0e-156 556.2 640 57.0
QL04p093175 Quercus lobata HOM05D006464 ORTHO05D007923 3.3e-155 552.7 619 58.2
HPP92_005952 Vanilla planifolia HOM05D006464 ORTHO05D007923 3.4e-152 542.7 730 47.7
Actinidia24662 Actinidia chinensis HOM05D006464 ORTHO05D007923 5.8e-152 542.0 603 59.7
Glyma.05G072500 Glycine max HOM05D006464 ORTHO05D007923 1.7e-151 540.4 322 85.1
TPR.G39331 Trifolium pratense HOM05D006464 ORTHO05D007923 1.1e-150 537.7 318 85.5
Medtr6g004710 Medicago truncatula HOM05D006464 ORTHO05D007923 5.4e-142 508.8 304 84.2
Zm00001eb071030 Zea mays HOM05D006464 ORTHO05D007923 1.2e-141 507.7 743 47.1
Actinidia12757 Actinidia chinensis HOM05D006464 ORTHO05D007923 1.9e-139 500.4 322 82.3
Os04g0612800 Oryza sativa ssp. japonica HOM05D006464 ORTHO05D007923 5.6e-139 498.8 746 46.1
SEGI_37454 Sequoiadendron giganteum HOM05D006464 ORTHO05D007923 7.3e-131 471.9 310 74.8
SHI52114 Sapria himalayana HOM05D006464 ORTHO05D007923 1.8e-92 344.4 267 69.3
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.9e-84 316.6 190 84.2
MD10G1213600 Malus domestica HOM05D006464 ORTHO05D007923 2.4e-81 307.4 397 53.1
Actinidia12756 Actinidia chinensis HOM05D006464 ORTHO05D007923 3.5e-72 276.9 201 70.6
MD10G1213500 Malus domestica HOM05D006464 ORTHO05D007923 3.6e-69 266.9 152 86.8
TPR.G31249 Trifolium pratense HOM05D006464 ORTHO05D007923 5.9e-64 249.6 181 69.1
arahy.Tifrunner.gnm1.ann1.HD0F2Q Arachis hypogaea HOM05D006464 ORTHO05D007923 4.5e-56 223.4 206 56.8
arahy.Tifrunner.gnm1.ann1.SHRD5B Arachis hypogaea HOM05D006464 ORTHO05D007923 1.4e-44 185.3 147 63.9
Aa31LG4G1550 Aethionema arabicum HOM05D006464 ORTHO05D007923 3.4e-43 180.6 158 57.0
SEGI_39627 Sequoiadendron giganteum HOM05D006464 ORTHO05D007923 3.1e-36 157.5 177 45.2
SMO196G0223 Selaginella moellendorffii HOM05D006464 ORTHO05D007923 2.1e-24 118.2 253 28.1
EL10Ac7g17377 Beta vulgaris HOM05D006464 ORTHO05D007923 2.3e-15 88.2 75 56.0
Oeu046263.1 Olea europaea HOM05D006464 ORTHO05D007923 1.1e-14 85.9 65 64.6
AagrBONN_evm.TU.Sc2ySwM_228.2469 Anthoceros agrestis HOM05D004079 ORTHO05D005437 4.8e-13 80.5 238 27.7
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 7.6e-11 73.2 194 26.3
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.8e-10 70.9 166 31.3
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 1.9e-09 68.6 188 29.3
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 1.6e-08 65.5 172 30.8
Peaxi162Scf00009g00051 Petunia axillaris HOM05D004079 ORTHO05D005437 2.3e-07 61.6 132 29.5
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 5.1e-07 60.5 135 33.3
arahy.Tifrunner.gnm1.ann1.1R97WW Arachis hypogaea HOM05D004079 ORTHO05D005437 5.1e-07 60.5 132 29.5
arahy.Tifrunner.gnm1.ann1.I97YLG Arachis hypogaea HOM05D004079 ORTHO05D005437 5.1e-07 60.5 132 29.5
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 5.1e-07 60.5 160 28.1
Actinidia34976 Actinidia chinensis HOM05D004079 ORTHO05D005437 6.6e-07 60.1 160 28.8
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 6.6e-07 60.1 132 29.5
RcHm_v2.0_Chr7g0180381 Rosa chinensis HOM05D004079 ORTHO05D005437 6.6e-07 60.1 132 29.5
Actinidia04930 Actinidia chinensis HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 30.3
CSS0036009 Camellia sinensis var. sinensis HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 29.5
CSS0048290 Camellia sinensis var. sinensis HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 29.5
Dinv38652 Davidia involucrata HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 29.5
FvH4_5g15730 Fragaria vesca HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 28.8
FAN04G1937 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 28.8
FAN08G0428 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 28.8
FAN13G1290 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 28.8
FAN18G0859 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 28.8
Nitab4.5_0004478g0010 Nicotiana tabacum HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 29.5
Nitab4.5_0007282g0060 Nicotiana tabacum HOM05D004079 ORTHO05D005437 1.1e-06 59.3 132 29.5
PGR044G0186 Punica granatum HOM05D004079 ORTHO05D005437 1.1e-06 59.3 182 26.9
Sed0004776 Sechium edule HOM05D004079 ORTHO05D005437 1.1e-06 59.3 215 24.7
Solyc03g113380.4 Solanum lycopersicum HOM05D004079 ORTHO05D005437 1.1e-06 59.3 133 30.1
Sopen03g032430 Solanum pennellii HOM05D004079 ORTHO05D005437 1.1e-06 59.3 133 30.1
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 1.5e-06 58.9 164 29.3
Haze_07393 Corylus avellana HOM05D004079 ORTHO05D005437 1.5e-06 58.9 163 28.8
Lj5P117T35 Lonicera japonica HOM05D004079 ORTHO05D005437 1.9e-06 58.5 160 26.9
Lj1g0021535 Lotus japonicus HOM05D004079 ORTHO05D005437 1.9e-06 58.5 134 31.3
Prupe.5G184700 Prunus persica HOM05D004079 ORTHO05D005437 1.9e-06 58.5 160 27.5
PGSC0003DMG400013180 Solanum tuberosum HOM05D004079 ORTHO05D005437 1.9e-06 58.5 132 28.8
ClCG06G016440 Citrullus lanatus HOM05D004079 ORTHO05D005437 2.5e-06 58.2 132 29.5
HanXRQChr09g0271291 Helianthus annuus HOM05D004079 ORTHO05D005437 2.5e-06 58.2 143 28.7
MD14G1192100 Malus domestica HOM05D004079 ORTHO05D005437 2.5e-06 58.2 171 26.3
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 2.5e-06 58.2 132 29.5
CAN.G999.30 Capsicum annuum HOM05D004079 ORTHO05D005437 3.3e-06 57.8 133 30.1
Cc04_g15850 Coffea canephora HOM05D004079 ORTHO05D005437 3.3e-06 57.8 160 27.5
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 3.3e-06 57.8 160 28.1
BcaB07g31914 Brassica carinata HOM05D004079 ORTHO05D005437 4.3e-06 57.4 202 26.2
CiPaw.11G036400 Carya illinoinensis HOM05D004079 ORTHO05D005437 4.3e-06 57.4 163 28.2
ECA232G1217 Erigeron canadensis HOM05D004079 ORTHO05D005437 4.3e-06 57.4 160 27.5
Rhsim12G0159600 Rhododendron simsii HOM05D004079 ORTHO05D005437 4.3e-06 57.4 160 27.5
BcaC05g25795 Brassica carinata HOM05D004079 ORTHO05D005437 5.6e-06 57.0 160 28.1
A06p15120 Brassica napus HOM05D004079 ORTHO05D005437 5.6e-06 57.0 161 28.6
C05p17340 Brassica napus HOM05D004079 ORTHO05D005437 5.6e-06 57.0 160 28.1
BolC5t30434H Brassica oleracea HOM05D004079 ORTHO05D005437 5.6e-06 57.0 160 28.1
BraA06t24627Z Brassica rapa HOM05D004079 ORTHO05D005437 5.6e-06 57.0 161 28.6
Ca_26037_v3 Cicer arietinum L. HOM05D004079 ORTHO05D005437 5.6e-06 57.0 132 29.5
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 5.6e-06 57.0 162 29.0
arahy.Tifrunner.gnm1.ann1.8GL56R Arachis hypogaea HOM05D006749 ORTHO05D008352 7.4e-06 56.6 174 25.9
arahy.Tifrunner.gnm1.ann1.TALZ6N Arachis hypogaea HOM05D006749 ORTHO05D008352 7.4e-06 56.6 174 25.9
AT1G74750 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 9.6e-06 56.2 160 28.1
BcaB03g14475 Brassica carinata HOM05D004079 ORTHO05D005437 9.6e-06 56.2 160 28.1
BcaC07g38966 Brassica carinata HOM05D004079 ORTHO05D005437 9.6e-06 56.2 160 28.1
A08p30100 Brassica napus HOM05D004079 ORTHO05D005437 9.6e-06 56.2 133 30.1
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 9.6e-06 56.2 133 30.1
Cfa019013 Carpinus fangiana HOM05D004079 ORTHO05D005437 9.6e-06 56.2 163 28.2
Gohir.D11G032200 Gossypium hirsutum HOM05D004079 ORTHO05D005437 9.6e-06 56.2 133 30.1
Hma1.2p1_0104F.1_g050360 Hydrangea macrophylla HOM05D004079 ORTHO05D005437 9.6e-06 56.2 132 28.0


User provided reference genes

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