Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048488 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.3e-75 285.4 140 100.0
CSS0024801 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.2e-74 283.1 140 99.3
CSS0033888 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.2e-52 209.9 135 79.3
CSS0047007 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.7e-38 162.9 172 54.1
Actinidia14749 Actinidia chinensis HOM05D000375 ORTHO05D000240 7.6e-34 147.5 148 56.1
CSS0005525 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.4e-32 142.5 157 52.2
Actinidia18155 Actinidia chinensis HOM05D000375 ORTHO05D000240 3.5e-31 138.7 147 53.7
Dinv28022 Davidia involucrata HOM05D000375 ORTHO05D000240 8.1e-28 127.5 159 46.5
TAR629G1540 Trochodendron aralioides HOM05D000375 ORTHO05D000240 3.0e-22 109.0 168 40.5
Nitab4.5_0001033g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 9.6e-21 104.0 159 40.9
Hma1.2p1_1179F.1_g264560 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 2.1e-20 102.8 150 42.0
Nitab4.5_0006741g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 4.8e-20 101.7 160 40.0
Rhsim07G0138200 Rhododendron simsii HOM05D000375 ORTHO05D000240 4.8e-20 101.7 155 42.6
Cpa.g.sc43.137 Carica papaya HOM05D000375 ORTHO05D000240 6.2e-20 101.3 138 42.8
Dinv29125 Davidia involucrata HOM05D000375 ORTHO05D000240 6.2e-20 101.3 137 41.6
Haze_00370 Corylus avellana HOM05D000375 ORTHO05D000240 8.1e-20 100.9 138 43.5
QL09p020729 Quercus lobata HOM05D000375 ORTHO05D000240 1.4e-19 100.1 137 42.3
Oeu042217.2 Olea europaea HOM05D000375 ORTHO05D000240 1.8e-19 99.8 162 37.0
Nn1g02115 Nelumbo nucifera HOM05D000375 ORTHO05D000240 2.4e-19 99.4 166 39.2
Oeu059315.1 Olea europaea HOM05D000375 ORTHO05D000240 3.1e-19 99.0 160 38.1
GSVIVG01024326001 Vitis vinifera HOM05D000375 ORTHO05D000240 3.1e-19 99.0 136 43.4
Thecc.05G222800 Theobroma cacao HOM05D000375 ORTHO05D000240 1.5e-18 96.7 136 41.9
CiPaw.05G212700 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.6e-18 95.9 136 41.2
PGSC0003DMG400030881 Solanum tuberosum HOM05D000375 ORTHO05D000240 5.8e-18 94.7 157 37.6
COL.COLO4_15135 Corchorus olitorius HOM05D000375 ORTHO05D000240 7.6e-18 94.4 139 41.7
RcHm_v2.0_Chr1g0384601 Rosa chinensis HOM05D000375 ORTHO05D000240 7.6e-18 94.4 136 39.7
Sopen08g024600 Solanum pennellii HOM05D000375 ORTHO05D000240 7.6e-18 94.4 157 36.9
vmacro14230 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 7.6e-18 94.4 146 41.8
Nitab4.5_0000943g0150 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.0e-17 94.0 159 38.4
Duzib177G0248 Durio zibethinus HOM05D000375 ORTHO05D000240 1.3e-17 93.6 135 42.2
Solyc08g075950.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 1.3e-17 93.6 157 36.3
Aqoxy3G01897 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 4.9e-17 91.7 159 37.1
DCAR_008187 Daucus carota HOM05D000375 ORTHO05D000240 4.9e-17 91.7 153 37.9
Peaxi162Scf00045g00455 Petunia axillaris HOM05D000375 ORTHO05D000240 6.5e-17 91.3 134 40.3
Sed0008187 Sechium edule HOM05D000375 ORTHO05D000240 6.5e-17 91.3 142 38.0
CAN.G1269.5 Capsicum annuum HOM05D000375 ORTHO05D000240 8.4e-17 90.9 160 36.2
Ciclev10032065m.g Citrus clementina HOM05D000375 ORTHO05D000240 8.4e-17 90.9 138 42.0
TWI60G1010 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 8.4e-17 90.9 138 41.3
ATR0829G215 Amborella trichopoda HOM05D000375 ORTHO05D000240 1.1e-16 90.5 164 39.0
CiPaw.06G036100 Carya illinoinensis HOM05D000375 ORTHO05D000240 1.1e-16 90.5 137 40.9
PGSC0003DMG400029384 Solanum tuberosum HOM05D000375 ORTHO05D000240 1.1e-16 90.5 157 38.2
Ca_19983_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 1.4e-16 90.1 142 37.3
ClCG02G007720 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.9e-16 89.7 144 34.7
FAN03G3075 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.9e-16 89.7 138 39.1
Gorai.003G057700 Gossypium raimondii HOM05D000375 ORTHO05D000240 3.2e-16 89.0 136 39.7
Solyc12g096070.2 Solanum lycopersicum HOM05D000375 ORTHO05D000240 4.2e-16 88.6 156 36.5
Sed0015644 Sechium edule HOM05D000375 ORTHO05D000240 5.5e-16 88.2 137 38.7
Nitab4.5_0003970g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 7.1e-16 87.8 156 37.2
TWI34G0764 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 7.1e-16 87.8 135 40.0
MSTRG.25719 Avicennia marina HOM05D000375 ORTHO05D000240 1.6e-15 86.7 166 34.9
Ca_30884_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 2.1e-15 86.3 136 37.5
PSO782G1866 Papaver somniferum HOM05D000375 ORTHO05D000240 2.1e-15 86.3 163 35.0
FAN01G2079 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.7e-15 85.9 137 38.0
Gohir.D03G054900 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.7e-15 85.9 136 39.0
Manes.09G129700 Manihot esculenta HOM05D000375 ORTHO05D000240 2.7e-15 85.9 133 39.8
MELO3C024739.2 Cucumis melo HOM05D000375 ORTHO05D000240 3.5e-15 85.5 143 35.0
FAN10G1755 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.5e-15 85.5 136 38.2
Potri.013G077500 Populus trichocarpa HOM05D000375 ORTHO05D000240 3.5e-15 85.5 129 39.5
CsaV3_2G035970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 4.6e-15 85.1 136 36.8
Sopen12g031960 Solanum pennellii HOM05D000375 ORTHO05D000240 6.0e-15 84.7 149 36.9
TWI32G1125 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 6.0e-15 84.7 133 39.8
Atru.chr6.1499 Acer truncatum HOM05D000375 ORTHO05D000240 1.0e-14 84.0 155 36.1
FvH4_7g34250 Fragaria vesca HOM05D000375 ORTHO05D000240 1.3e-14 83.6 136 37.5
Lj3g0001039 Lotus japonicus HOM05D000375 ORTHO05D000240 1.3e-14 83.6 136 36.8
CAN.G137.32 Capsicum annuum HOM05D000375 ORTHO05D000240 1.8e-14 83.2 147 38.8
Medtr0001s0490 Medicago truncatula HOM05D000375 ORTHO05D000240 1.8e-14 83.2 138 39.1
Psat7g155280 Pisum sativum HOM05D000375 ORTHO05D000240 1.8e-14 83.2 139 38.1
Phvul.011G017700 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 3.0e-14 82.4 136 38.2
Sopen08g001470 Solanum pennellii HOM05D000375 ORTHO05D000240 3.9e-14 82.0 148 37.8
Manes.08G160800 Manihot esculenta HOM05D000375 ORTHO05D000240 5.1e-14 81.6 139 36.7
DCAR_024949 Daucus carota HOM05D000375 ORTHO05D000240 6.7e-14 81.3 143 38.5
Peaxi162Scf00408g00710 Petunia axillaris HOM05D000375 ORTHO05D000240 6.7e-14 81.3 145 40.7
PGSC0003DMG400018491 Solanum tuberosum HOM05D000375 ORTHO05D000240 6.7e-14 81.3 148 37.8
CDE04G3543 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 8.7e-14 80.9 166 34.3
Glyma.11G110700 Glycine max HOM05D000375 ORTHO05D000240 8.7e-14 80.9 138 37.7
Lj8C330T4 Lonicera japonica HOM05D000375 ORTHO05D000240 8.7e-14 80.9 164 36.0
TPR.G9838 Trifolium pratense HOM05D000375 ORTHO05D000240 1.5e-13 80.1 137 36.5
VMungo1127G1810 Vigna mungo HOM05D000375 ORTHO05D000240 1.5e-13 80.1 142 37.3
CDE02G1805 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.9e-13 79.7 161 35.4
Solyc08g005430.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 4.3e-13 78.6 148 37.2
CDE11G0058 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 5.7e-13 78.2 160 32.5
Nitab4.5_0001424g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 7.4e-13 77.8 150 36.7
PSO063G6301 Papaver somniferum HOM05D000375 ORTHO05D000240 7.4e-13 77.8 156 34.0
Sabra13G0066200 Salix brachista HOM05D000375 ORTHO05D000240 7.4e-13 77.8 129 36.4
Glyma.01G234400 Glycine max HOM05D000375 ORTHO05D000240 1.3e-12 77.0 133 39.8
Atru.chr12.1872 Acer truncatum HOM05D000375 ORTHO05D000240 1.6e-12 76.6 138 38.4
Nitab4.5_0005880g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.8e-12 75.9 131 39.7
Lj7C161G5 Lonicera japonica HOM05D000375 ORTHO05D000240 3.7e-12 75.5 166 36.7
Sabra03G0068700 Salix brachista HOM05D000375 ORTHO05D000240 4.8e-12 75.1 164 31.1
ECA240G3340 Erigeron canadensis HOM05D000375 ORTHO05D000240 6.3e-12 74.7 155 34.2
Gohir.A02G125800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 8.2e-12 74.3 136 36.8
HPP92_025936 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.1e-11 73.9 159 31.4
arahy.Tifrunner.gnm1.ann1.AFHS7R Arachis hypogaea HOM05D000375 ORTHO05D000240 1.4e-11 73.6 128 38.3
arahy.Tifrunner.gnm1.ann1.BWV8RN Arachis hypogaea HOM05D000375 ORTHO05D000240 1.4e-11 73.6 128 38.3
AUR62002094 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.8e-11 73.2 141 35.5
Potri.003G100800 Populus trichocarpa HOM05D000375 ORTHO05D000240 2.4e-11 72.8 156 32.1
Potri.019G042300 Populus trichocarpa HOM05D000375 ORTHO05D000240 5.3e-11 71.6 131 34.4
MSTRG.11890 Avicennia marina HOM05D000375 ORTHO05D000240 6.9e-11 71.2 145 35.2
Phvul.002G041800 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 6.9e-11 71.2 138 37.0
Gohir.D13G162200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.2e-10 70.5 144 35.4
Gorai.013G184200 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.2e-10 70.5 144 35.4
Glyma.12G014700 Glycine max HOM05D000375 ORTHO05D000240 1.5e-10 70.1 136 35.3
Potri.001G132600 Populus trichocarpa HOM05D000375 ORTHO05D000240 1.5e-10 70.1 155 32.3
Glyma.11G008500 Glycine max HOM05D000375 ORTHO05D000240 4.5e-10 68.6 130 40.0
Gohir.A13G157400 Gossypium hirsutum HOM05D000375 ORTHO05D000240 7.6e-10 67.8 144 35.4
Sabra01G0102300 Salix brachista HOM05D000375 ORTHO05D000240 1.3e-09 67.0 155 29.7
Actinidia33616 Actinidia chinensis HOM05D000375 ORTHO05D000240 2.2e-09 66.2 93 36.6
Migut.A00569 Erythranthe guttata HOM05D000375 ORTHO05D000240 2.2e-09 66.2 143 33.6
Prupe.5G021400 Prunus persica HOM05D000375 ORTHO05D000240 2.9e-09 65.9 149 31.5
SalBow8G5453 Salvia bowleyana HOM05D000375 ORTHO05D000240 3.8e-09 65.5 144 34.7
unitig_0.g2836 Utricularia gibba HOM05D000375 ORTHO05D000240 3.8e-09 65.5 146 34.9
AUR62028212 Chenopodium quinoa HOM05D000375 ORTHO05D000240 5.0e-09 65.1 129 32.6
Migut.E01342 Erythranthe guttata HOM05D000375 ORTHO05D000240 5.0e-09 65.1 165 29.1
MSTRG.1777 Avicennia marina HOM05D000375 ORTHO05D000240 6.5e-09 64.7 152 32.9
Lalb_Chr09g0320071 Lupinus albus HOM05D000375 ORTHO05D000240 8.5e-09 64.3 131 37.4
Nn6g35612 Nelumbo nucifera HOM05D000375 ORTHO05D000240 2.5e-08 62.8 157 26.8
HPP92_003429 Vanilla planifolia HOM05D000375 ORTHO05D000240 2.5e-08 62.8 160 30.6
SalBow4G0707 Salvia bowleyana HOM05D000375 ORTHO05D000240 3.2e-08 62.4 157 32.5
Os06g0116200 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 4.2e-08 62.0 146 28.1
HanXRQChr03g0082181 Helianthus annuus HOM05D000375 ORTHO05D000240 9.3e-08 60.8 162 29.6
Os02g0701300 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 4.6e-07 58.5 123 31.7
Ciclev10001613m.g Citrus clementina HOM05D000375 ORTHO05D000240 6.1e-07 58.2 154 31.2
HanXRQChr13g0405031 Helianthus annuus HOM05D000375 ORTHO05D000240 1.0e-06 57.4 157 30.6
Zm00001eb378820 Zea mays HOM05D000375 ORTHO05D000240 1.0e-06 57.4 155 27.1
Os04g0600900 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 1.3e-06 57.0 145 32.4
Eucgr.D02603 Eucalyptus grandis HOM05D000375 ORTHO05D000240 3.0e-06 55.8 48 47.9
Zm00001eb430300 Zea mays HOM05D000375 ORTHO05D000240 3.9e-06 55.5 116 34.5
SGA_v2.0_scaffold96G29055 Striga asiatica HOM05D000375 ORTHO05D000240 5.1e-06 55.1 162 27.8
THA.LOC104823827 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 5.1e-06 55.1 139 31.7


User provided reference genes

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