Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.0e-99 366.7 179 100.0
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 6.6e-99 364.0 179 99.4
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 5.4e-69 264.6 178 73.0
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.4e-64 249.2 178 69.7
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 3.1e-64 248.8 178 69.7
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 4.6e-60 235.0 174 70.1
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 5.3e-56 221.5 177 66.7
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 2.6e-55 219.2 169 63.3
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.9e-50 203.0 163 57.1
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 9.7e-50 200.7 179 54.7
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 3.7e-49 198.7 177 53.7
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.1e-48 197.2 162 58.6
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.8e-48 196.4 178 53.9
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 2.4e-48 196.1 170 55.9
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 4.1e-48 195.3 162 57.4
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 1.7e-46 189.9 162 56.2
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 5.0e-46 188.3 171 53.2
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 6.5e-46 188.0 169 53.8
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.9e-45 186.4 171 50.3
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 4.2e-45 185.3 179 54.2
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.1e-44 183.0 154 58.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 2.7e-44 182.6 165 53.3
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 3.6e-44 182.2 177 51.4
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 4.6e-44 181.8 177 48.0
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.8e-43 179.9 166 54.2
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 5.1e-43 178.3 176 50.6
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 5.1e-43 178.3 168 51.8
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 1.1e-42 177.2 166 53.6
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 2.0e-42 176.4 166 54.2
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 2.5e-42 176.0 172 48.3
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 3.3e-42 175.6 177 52.5
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 7.4e-42 174.5 164 51.8
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 9.7e-42 174.1 163 52.8
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 2.4e-40 169.5 159 52.8
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 5.3e-40 168.3 176 48.9
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 6.9e-40 167.9 160 51.9
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 1.2e-39 167.2 176 48.9
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 1.2e-39 167.2 165 47.3
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.4e-39 165.6 166 52.4
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 3.4e-39 165.6 170 49.4
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.5e-39 165.2 178 49.4
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 7.7e-39 164.5 178 50.0
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.0e-38 164.1 155 49.7
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.3e-38 163.7 161 48.4
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 2.2e-38 162.9 178 48.9
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.8e-38 162.2 155 50.3
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 5.0e-38 161.8 156 49.4
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 6.5e-38 161.4 173 45.7
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 8.5e-38 161.0 164 48.8
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 8.5e-38 161.0 175 47.4
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.9e-37 159.8 179 48.0
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 9.4e-37 157.5 166 50.6
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 1.6e-36 156.8 177 45.8
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 6.1e-36 154.8 162 45.1
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 6.1e-36 154.8 149 51.7
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 1.4e-35 153.7 156 48.7
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 1.5e-34 150.2 167 46.7
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 2.0e-34 149.8 177 44.1
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 2.6e-34 149.4 154 45.5
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 9.7e-34 147.5 160 46.2
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 3.5e-31 139.0 171 40.4
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 3.5e-31 139.0 170 40.0
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 1.0e-30 137.5 160 45.6
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 6.7e-27 124.8 130 47.7
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 3.7e-25 119.0 107 56.1
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 7.7e-23 111.3 99 51.5
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 1.3e-22 110.5 107 50.5
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 4.7e-20 102.1 122 42.6
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 5.2e-19 98.6 87 58.6
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 7.5e-18 94.7 153 34.6
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 1.3e-17 94.0 114 37.7
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.7e-17 93.6 165 30.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.7e-17 93.6 138 39.1
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 3.7e-17 92.4 152 33.6
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 4.8e-17 92.0 180 31.1
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 4.8e-17 92.0 164 30.5
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 6.3e-17 91.7 157 34.4
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 8.3e-17 91.3 157 33.8
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 1.1e-16 90.9 152 29.6
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.8e-16 90.1 143 35.7
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.8e-16 90.1 164 31.1
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.8e-16 90.1 152 32.9
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.4e-16 89.7 156 34.0
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 2.4e-16 89.7 156 34.0
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 3.1e-16 89.4 157 33.1
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 3.1e-16 89.4 174 35.6
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 5.4e-16 88.6 158 32.9
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 7.0e-16 88.2 172 28.5
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 9.1e-16 87.8 169 27.2
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.2e-15 87.4 146 32.2
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.6e-15 87.0 140 31.4
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.0e-15 86.7 156 32.7
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.0e-15 86.7 160 33.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 3.5e-15 85.9 142 34.5
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 4.5e-15 85.5 149 31.5
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 4.5e-15 85.5 152 32.9
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 5.9e-15 85.1 152 32.9
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 5.9e-15 85.1 155 32.3
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 7.7e-15 84.7 165 30.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 7.7e-15 84.7 153 32.0
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.0e-14 84.3 135 33.3
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.0e-14 84.3 165 30.3
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.3e-14 84.0 155 31.6
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 2.2e-14 83.2 155 31.6
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 2.2e-14 83.2 158 31.6
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.9e-14 82.8 164 29.9
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 5.0e-14 82.0 134 33.6
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.0e-14 82.0 140 33.6
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.0e-14 82.0 169 30.2
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 6.5e-14 81.6 148 30.4
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.5e-13 80.5 140 29.3
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.5e-13 80.5 140 30.7
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.9e-13 80.1 165 29.1
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 1.9e-13 80.1 135 32.6
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 1.9e-13 80.1 135 32.6
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.9e-13 80.1 151 31.1
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.9e-13 80.1 165 28.5
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.9e-13 80.1 164 26.2
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.5e-13 79.7 138 29.7
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.5e-13 79.7 139 31.7
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 3.2e-13 79.3 135 31.9
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 3.2e-13 79.3 135 31.9
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 3.2e-13 79.3 140 30.7
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 3.2e-13 79.3 168 29.2
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 5.5e-13 78.6 169 25.4
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 9.4e-13 77.8 164 29.3
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 9.4e-13 77.8 178 28.7
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 1.6e-12 77.0 150 28.7
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 2.1e-12 76.6 162 29.0
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 2.1e-12 76.6 140 30.7
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 2.7e-12 76.3 140 29.3
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 3.6e-12 75.9 135 31.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 3.6e-12 75.9 162 27.8
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 4.7e-12 75.5 154 28.6
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.7e-12 75.5 159 30.2
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.7e-12 75.5 156 29.5
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 6.1e-12 75.1 171 26.9
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 6.1e-12 75.1 141 28.4
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.1e-12 75.1 141 28.4
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 8.0e-12 74.7 135 29.6
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.0e-11 74.3 179 26.8
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.0e-11 74.3 149 29.5
MD15G1063400 Malus domestica HOM05D008077 ORTHO05D010221 1.0e-11 74.3 111 40.5
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 2.3e-11 73.2 140 29.3
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 3.0e-11 72.8 147 27.9
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.0e-11 72.8 159 28.9
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 3.0e-11 72.8 140 29.3
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.0e-11 72.4 128 28.1
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 4.0e-11 72.4 141 31.2
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 4.0e-11 72.4 140 29.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 4.0e-11 72.4 140 29.3
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 5.2e-11 72.0 140 29.3
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 5.2e-11 72.0 141 31.2
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 5.2e-11 72.0 154 27.9
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 6.8e-11 71.6 143 29.4
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.5e-10 70.5 140 28.6
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 2.2e-09 66.6 134 28.4
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.7e-09 65.9 134 27.6
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 8.3e-09 64.7 134 28.4
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 8.6e-06 54.7 115 26.1


User provided reference genes

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