Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 2.5e-176 622.1 328 100.0
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 7.3e-112 407.9 339 67.6
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.2e-101 374.0 342 63.5
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 6.4e-100 368.2 357 61.6
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.4e-94 350.5 299 64.9
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.4e-91 340.5 335 58.8
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.5e-83 312.0 287 60.6
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 4.3e-80 302.4 476 42.9
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 2.8e-79 299.7 338 54.7
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.0e-77 293.5 336 53.9
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.4e-77 292.7 346 51.2
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 4.5e-77 292.4 336 53.6
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.5e-77 292.4 343 51.6
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.3e-76 290.8 343 51.3
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 4.9e-76 288.9 362 51.1
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 4.6e-74 282.3 343 48.1
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.0e-73 279.6 354 52.8
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.7e-72 275.4 344 51.7
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 7.4e-72 275.0 332 51.8
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.1e-70 271.2 335 49.9
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.1e-70 271.2 334 51.5
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 5.3e-70 268.9 335 50.4
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.3e-70 268.9 337 51.3
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 1.2e-69 267.7 345 51.0
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 2.0e-69 266.9 334 50.6
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 3.4e-69 266.2 336 48.8
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.4e-67 260.8 334 47.0
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 3.2e-67 259.6 332 47.9
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 4.2e-67 259.2 335 50.7
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.1e-66 256.9 345 46.1
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.5e-64 250.0 346 46.5
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.3e-63 247.7 331 45.9
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.6e-63 247.3 331 46.5
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 2.8e-63 246.5 342 47.4
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 5.3e-62 242.3 353 48.4
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.5e-61 240.7 345 46.7
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 3.4e-61 239.6 337 46.6
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 5.9e-61 238.8 350 48.0
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.7e-60 237.3 330 46.1
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 2.9e-60 236.5 348 48.0
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 5.0e-60 235.7 333 45.3
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.4e-59 234.2 331 46.8
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 5.5e-59 232.3 342 46.5
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.6e-58 230.7 346 44.2
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 3.6e-58 229.6 323 49.2
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 7.9e-58 228.4 333 45.9
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.5e-56 224.2 345 42.9
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.4e-56 222.6 340 44.4
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 7.4e-56 221.9 340 44.1
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.3e-55 221.1 338 44.4
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 2.2e-55 220.3 327 45.0
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.2e-55 220.3 339 44.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.1e-54 218.0 345 42.9
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.4e-54 216.9 345 42.6
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 4.1e-54 216.1 334 43.4
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 4.5e-53 212.6 329 44.1
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.3e-52 211.1 332 42.2
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 1.7e-52 210.7 340 42.4
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 2.2e-52 210.3 337 42.1
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 5.0e-52 209.1 335 40.9
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 5.0e-52 209.1 337 42.1
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.4e-51 207.6 328 42.1
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 7.2e-51 205.3 353 41.1
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 9.4e-51 204.9 362 42.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.6e-50 204.1 336 41.1
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 1.6e-50 204.1 230 53.0
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.6e-50 203.0 328 42.7
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.7e-50 202.6 328 41.2
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 6.1e-50 202.2 334 41.9
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 1.4e-49 201.1 332 44.3
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.4e-49 201.1 341 42.2
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 1.4e-49 201.1 331 42.9
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.4e-49 201.1 337 41.8
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.8e-49 200.7 331 39.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.8e-49 200.7 331 39.9
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 3.0e-49 199.9 333 41.4
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 3.9e-49 199.5 324 42.6
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 3.9e-49 199.5 332 41.0
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 8.8e-49 198.4 330 40.9
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 2.0e-48 197.2 335 41.2
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 2.0e-48 197.2 332 41.9
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 7.4e-48 195.3 336 41.4
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-47 194.5 351 39.3
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 1.3e-47 194.5 327 38.8
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.7e-47 194.1 333 41.7
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 2.2e-47 193.7 333 39.9
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.1e-46 191.4 352 38.9
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.6e-45 187.6 334 40.4
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 5.9e-45 185.7 339 39.2
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.7e-44 184.1 331 40.5
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 5.0e-44 182.6 335 40.3
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.1e-43 181.4 341 40.8
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 3.2e-43 179.9 340 39.1
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.4e-41 174.5 340 37.9
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.8e-41 174.1 341 40.2
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.3e-41 173.7 340 42.4
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.3e-41 173.7 341 38.4
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 8.8e-41 171.8 346 37.6
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.2e-40 171.4 274 43.8
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.5e-40 171.0 338 38.8
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.5e-40 171.0 336 38.7
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.5e-40 171.0 351 37.6
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 7.5e-40 168.7 335 37.9
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.1e-38 164.9 343 37.9
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.4e-38 163.7 337 37.4
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 3.1e-38 163.3 334 41.3
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 7.0e-38 162.2 338 36.1
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 1.6e-37 161.0 337 38.9
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 5.9e-37 159.1 343 38.5
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 7.7e-37 158.7 331 37.5
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 8.5e-36 155.2 333 38.7
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.1e-35 154.8 326 35.0
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 1.9e-35 154.1 340 35.6
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 2.5e-35 153.7 337 38.3
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 5.5e-35 152.5 241 41.5
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 7.2e-35 152.1 333 36.6
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 7.2e-35 152.1 325 35.7
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.0e-33 148.3 333 37.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 1.4e-33 147.9 332 36.7
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.4e-33 147.9 334 35.6
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 3.0e-33 146.7 332 34.9
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 6.8e-33 145.6 338 36.1
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.2e-32 144.8 358 35.8
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.0e-32 144.1 348 35.3
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 2.6e-32 143.7 333 36.0
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 3.4e-32 143.3 339 36.9
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 3.4e-32 143.3 332 36.4
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 4.4e-32 142.9 340 36.5
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 5.7e-32 142.5 242 40.5
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 9.1e-30 135.2 188 47.9
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.3e-28 131.3 343 31.2
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 2.9e-28 130.2 346 34.7
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 2.9e-28 130.2 335 34.9
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.1e-27 128.3 304 33.2
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.5e-27 127.9 385 30.9
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.5e-27 127.9 339 31.0
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 9.5e-27 125.2 387 30.7
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.2e-26 124.8 228 36.8
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-26 124.4 139 53.2
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.3e-25 120.6 281 35.9
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 4.0e-25 119.8 350 33.7
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 4.0e-25 119.8 179 39.7
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 2.0e-24 117.5 266 27.8
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 4.4e-24 116.3 333 32.4
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 4.4e-24 116.3 244 35.7
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 2.8e-23 113.6 101 62.4
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 6.3e-23 112.5 331 31.4
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 5.9e-21 105.9 269 32.3
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 1.7e-20 104.4 205 39.5
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 3.8e-20 103.2 326 31.6
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 5.0e-20 102.8 208 37.0
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.6e-18 97.8 322 28.9
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 2.1e-18 97.4 120 53.3
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.8e-18 97.1 117 50.4
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 6.1e-18 95.9 277 32.1
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 3.0e-17 93.6 217 35.0
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 3.4e-16 90.1 211 35.5
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 2.2e-15 87.4 121 46.3
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 2.2e-15 87.4 357 27.5
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 3.7e-15 86.7 359 27.0
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 6.4e-15 85.9 277 32.1
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 7.0e-14 82.4 352 26.7
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 1.2e-13 81.6 175 32.0
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 7.8e-13 79.0 329 28.9
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 3.3e-11 73.6 275 30.2
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 5.6e-11 72.8 158 36.1
Pp3c15_19720 Physcomitrium patens HOM05D002766 ORTHO05D002809 4.7e-10 69.7 357 26.1
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 6.2e-10 69.3 351 25.9
SEGI_27148 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 2.3e-09 67.4 258 29.8
CAN.G935.4 Capsicum annuum HOM05D003841 ORTHO05D004602 5.2e-09 66.2 98 41.8
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 6.8e-09 65.9 374 25.7
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 2.0e-08 64.3 150 36.0
CAN.G183.13 Capsicum annuum HOM05D003841 ORTHO05D004602 2.6e-08 63.9 229 27.9
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 5.8e-08 62.8 377 25.7
CAN.G1207.10 Capsicum annuum HOM05D003841 ORTHO05D004602 2.9e-07 60.5 65 53.8
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 6.4e-07 59.3 335 28.7
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 8.3e-07 58.9 344 25.0
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.1e-06 58.5 62 41.9
Zm00001eb249490 Zea mays HOM05D002766 ORTHO05D002809 1.1e-06 58.5 140 32.1
Lj1A977T69 Lonicera japonica HOM05D002766 ORTHO05D002809 3.2e-06 57.0 144 30.6
Os02g0657700 Oryza sativa ssp. japonica HOM05D002766 ORTHO05D002809 3.2e-06 57.0 148 29.1
CAN.G362.43 Capsicum annuum HOM05D003841 ORTHO05D004602 5.4e-06 56.2 33 75.8


User provided reference genes

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