Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.4e-139 498.8 253 100.0
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.7e-127 458.0 253 93.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.8e-108 395.2 252 78.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 8.4e-108 394.0 252 78.2
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.4e-107 393.3 270 75.6
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.1e-104 383.6 254 75.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 3.1e-102 375.6 215 85.6
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.5e-101 373.2 271 71.6
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 7.6e-101 370.9 252 71.8
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.5e-98 362.1 288 67.4
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.0e-97 359.0 253 69.6
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 5.7e-96 354.8 256 71.5
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.3e-95 353.6 254 71.7
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.7e-95 352.1 252 71.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.4e-94 350.1 247 69.6
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.1e-94 349.0 253 69.6
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 9.0e-94 347.4 254 71.7
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 9.0e-94 347.4 254 70.5
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.2e-93 347.1 254 70.9
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.6e-93 345.9 254 70.5
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 4.5e-93 345.1 253 68.4
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 5.9e-93 344.7 253 70.8
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.6e-93 344.4 254 71.7
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.3e-92 343.6 253 66.8
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.3e-92 343.6 258 67.1
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.9e-92 342.4 254 70.1
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.9e-91 339.7 251 68.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 3.2e-91 339.0 254 69.3
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.5e-91 338.2 257 68.5
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.6e-90 336.7 255 68.6
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.6e-90 335.5 253 67.6
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.6e-90 335.5 253 68.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 4.6e-90 335.1 253 68.0
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 6.1e-90 334.7 346 55.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 7.9e-90 334.3 254 66.9
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.8e-89 333.2 257 68.5
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.3e-89 332.8 248 68.5
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.7e-89 331.3 253 67.2
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 6.7e-89 331.3 253 67.6
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.7e-89 331.3 272 67.3
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 8.7e-89 330.9 251 67.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-88 330.5 244 68.0
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.5e-88 330.1 253 66.8
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.9e-88 329.7 250 67.2
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-88 329.7 253 67.2
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.3e-88 328.9 253 66.0
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.3e-88 328.9 253 66.0
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 7.4e-88 327.8 247 68.0
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.7e-88 327.4 253 66.0
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.3e-87 327.0 253 65.2
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 2.8e-87 325.9 272 62.5
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 2.8e-87 325.9 254 65.4
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.7e-87 325.5 249 65.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.7e-87 325.5 255 65.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.8e-87 325.1 272 62.5
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.3e-87 324.7 249 65.9
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 6.3e-87 324.7 251 66.9
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 6.3e-87 324.7 252 65.9
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 8.2e-87 324.3 255 65.5
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 8.2e-87 324.3 254 65.7
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-86 323.9 252 64.3
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.1e-86 323.9 253 65.6
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.8e-86 323.2 248 66.5
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 3.1e-86 322.4 218 72.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 5.3e-86 321.6 252 65.1
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 6.9e-86 321.2 201 81.6
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 9.1e-86 320.9 251 63.3
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 9.1e-86 320.9 251 63.3
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 9.1e-86 320.9 255 65.9
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.5e-85 320.1 258 63.2
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.5e-85 320.1 253 64.0
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 3.4e-85 318.9 268 64.6
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.0e-84 317.4 258 62.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 6.5e-84 314.7 248 63.7
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 8.5e-84 314.3 185 78.9
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 8.5e-84 314.3 194 77.3
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.5e-83 312.8 252 65.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 2.1e-82 309.7 247 64.4
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.1e-82 309.7 251 61.4
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.0e-81 307.4 247 62.8
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.0e-81 307.4 209 69.4
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.0e-81 305.8 249 63.5
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.0e-81 305.8 247 62.3
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.5e-80 303.5 250 62.0
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.5e-80 303.5 250 65.6
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 5.7e-80 301.6 254 63.0
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-79 300.4 246 61.4
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 2.8e-79 299.3 247 61.9
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.7e-79 298.9 209 68.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.7e-79 298.9 253 62.5
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 4.8e-79 298.5 203 69.5
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 6.3e-79 298.1 248 62.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 8.2e-79 297.7 250 61.6
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 4.1e-78 295.4 249 60.2
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 5.3e-78 295.0 172 83.1
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 2.6e-77 292.7 252 61.1
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 3.8e-76 288.9 254 59.4
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 8.5e-76 287.7 252 59.1
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 7.2e-75 284.6 168 80.4
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.3e-73 279.6 250 56.4
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 7.0e-70 268.1 204 66.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.6e-69 266.2 216 64.8
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.7e-68 263.5 226 58.8
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 5.5e-67 258.5 184 69.6
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 7.2e-67 258.1 253 56.1
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-66 257.3 184 68.5
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.2e-66 257.3 203 60.1
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 2.7e-66 256.1 215 62.8
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 6.1e-66 255.0 168 75.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.3e-63 247.3 427 41.5
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.8e-63 245.4 191 66.0
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.8e-62 243.4 146 79.5
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 9.1e-62 241.1 165 73.9
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 2.0e-61 240.0 154 77.9
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 3.5e-61 239.2 189 61.9
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.7e-60 236.9 252 51.6
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.9e-60 236.1 253 50.2
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.8e-60 235.7 185 65.9
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.7e-58 228.8 162 70.4
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 5.7e-56 221.9 186 57.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.2e-55 219.9 185 60.0
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 8.3e-55 218.0 215 56.7
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 7.7e-53 211.5 182 59.9
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.5e-51 207.2 184 62.0
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 1.3e-47 194.1 158 66.5
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 4.3e-43 179.1 242 39.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 5.6e-43 178.7 117 74.4
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 7.3e-43 178.3 215 44.7
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 9.5e-43 177.9 188 53.2
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 4.7e-42 175.6 158 59.5
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.2e-41 172.2 164 56.7
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.6e-37 160.6 101 80.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.5e-35 154.1 182 51.1
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 6.2e-34 148.7 101 70.3
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 8.0e-34 148.3 124 62.9
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 4.0e-33 146.0 178 44.9
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 5.8e-32 142.1 126 56.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.9e-28 129.4 113 58.4
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.9e-27 127.1 113 56.6
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.3e-25 120.2 128 50.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.3e-25 120.2 128 50.0
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.5e-24 117.5 124 54.8
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.0e-24 117.1 76 76.3
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 7.5e-24 115.2 183 37.7
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 5.4e-22 109.0 67 71.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.9e-19 100.5 68 73.5
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 4.7e-18 95.9 68 67.6
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.1e-18 95.1 64 67.2
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 7.1e-14 82.0 52 76.9
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-13 81.3 101 46.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.3e-12 77.8 109 45.0
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.5e-11 73.6 101 45.5
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 8.1e-10 68.6 84 47.6
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 9.0e-09 65.1 83 47.0
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 1.4e-06 57.8 34 79.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.9e-06 57.4 35 74.3


User provided reference genes

Program Settings