Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048443 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D020240 6.4e-37 156.8 72 100.0
CSS0003032 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D020240 5.6e-33 143.7 85 82.4
CSS0029002 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D020240 5.6e-33 143.7 85 82.4
CSS0021676 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D000659 5.5e-12 73.9 38 86.8
CSS0023391 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D020240 1.4e-10 69.3 38 81.6
Actinidia07449 Actinidia chinensis HOM05D000798 ORTHO05D000659 6.7e-10 67.0 38 76.3
Actinidia26421 Actinidia chinensis HOM05D000798 ORTHO05D000659 6.7e-10 67.0 38 76.3
RcHm_v2.0_Chr2g0089811 Rosa chinensis HOM05D000798 ORTHO05D000659 6.7e-10 67.0 38 73.7
CSS0045173 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D000659 1.5e-09 65.9 38 73.7
Cc00_g21770 Coffea canephora HOM05D000798 ORTHO05D000659 1.5e-09 65.9 38 71.1
Rhsim03G0245600 Rhododendron simsii HOM05D000798 ORTHO05D000659 1.5e-09 65.9 40 72.5
Dinv41566 Davidia involucrata HOM05D000798 ORTHO05D000659 2.0e-09 65.5 38 73.7
ECA240G1141 Erigeron canadensis HOM05D000798 ORTHO05D000659 2.5e-09 65.1 38 71.1
Lj7A640G25 Lonicera japonica HOM05D000798 ORTHO05D000659 3.3e-09 64.7 38 71.1
vmacro06187 Vaccinium macrocarpon HOM05D000798 ORTHO05D000659 3.3e-09 64.7 38 73.7
Aa31sc55G40 Aethionema arabicum HOM05D000798 ORTHO05D000659 4.3e-09 64.3 45 62.2
FvH4_1g04250 Fragaria vesca HOM05D000798 ORTHO05D000659 5.7e-09 63.9 38 71.1
FAN19G2777 Fragaria x ananassa HOM05D000798 ORTHO05D000659 5.7e-09 63.9 38 71.1
FAN23G2579 Fragaria x ananassa HOM05D000798 ORTHO05D000659 5.7e-09 63.9 38 71.1
FAN26G0542 Fragaria x ananassa HOM05D000798 ORTHO05D000659 5.7e-09 63.9 38 71.1
FAN28G2229 Fragaria x ananassa HOM05D000798 ORTHO05D000659 5.7e-09 63.9 38 71.1
Lalb_Chr08g0235051 Lupinus albus HOM05D000798 ORTHO05D000659 5.7e-09 63.9 38 68.4
SGA_v2.0_scaffold109G31038 Striga asiatica HOM05D000798 ORTHO05D000659 5.7e-09 63.9 39 71.8
arahy.Tifrunner.gnm1.ann1.KT8BMX Arachis hypogaea HOM05D000798 ORTHO05D000659 9.7e-09 63.2 38 68.4
ClCG11G002660 Citrullus lanatus HOM05D000798 ORTHO05D000659 9.7e-09 63.2 34 70.6
Oeu018250.1 Olea europaea HOM05D000798 ORTHO05D000659 9.7e-09 63.2 39 71.8
Phvul.003G176200 Phaseolus vulgaris HOM05D000798 ORTHO05D000659 9.7e-09 63.2 38 65.8
EL10Ac8g18551 Beta vulgaris HOM05D000798 ORTHO05D000659 1.3e-08 62.8 38 68.4
Lj4g0025420 Lotus japonicus HOM05D000798 ORTHO05D000659 1.7e-08 62.4 38 68.4
Sed0015367 Sechium edule HOM05D000798 ORTHO05D000659 1.7e-08 62.4 38 68.4
VMungo1215G1064 Vigna mungo HOM05D000798 ORTHO05D000659 1.7e-08 62.4 38 65.8
GSVIVG01015448001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.7e-08 62.4 38 68.4
Ah.09g227370 Amaranthus hybridus HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 65.8
BcaB03g13327 Brassica carinata HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
BcaC07g38398 Brassica carinata HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
A08p35100 Brassica napus HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
C08p11550 Brassica napus HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
BolC8t48834H Brassica oleracea HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
BraA08t35419Z Brassica rapa HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
ClCG06G010460 Citrullus lanatus HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
MELO3C025309.2 Cucumis melo HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
CsaV3_1G030920 Cucumis sativus L. HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
Thhalv10007761m.g Eutrema salsugineum HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
Glyma.05G012300 Glycine max HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 65.8
Prupe.7G234600 Prunus persica HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
PGR102G3109 Punica granatum HOM05D000798 ORTHO05D000659 2.2e-08 62.0 34 67.6
Sp1g07170 Schrenkiella parvula HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 68.4
THA.LOC104809019 Tarenaya hassleriana HOM05D000798 ORTHO05D000659 2.2e-08 62.0 38 65.8
CSS0046685 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D000659 2.8e-08 61.6 38 68.4
AUR62011036 Chenopodium quinoa HOM05D000798 ORTHO05D000659 2.8e-08 61.6 38 65.8
AUR62033409 Chenopodium quinoa HOM05D000798 ORTHO05D000659 2.8e-08 61.6 38 65.8
HanXRQChr09g0240511 Helianthus annuus HOM05D000798 ORTHO05D000659 2.8e-08 61.6 38 68.4
Lj1g0014091 Lotus japonicus HOM05D000798 ORTHO05D000659 2.8e-08 61.6 38 71.1
Eucgr.C04139 Eucalyptus grandis HOM05D000798 ORTHO05D000659 3.7e-08 61.2 38 68.4
Lalb_Chr07g0178651 Lupinus albus HOM05D000798 ORTHO05D000659 3.7e-08 61.2 38 65.8
Lalb_Chr12g0197631 Lupinus albus HOM05D000798 ORTHO05D000659 3.7e-08 61.2 38 65.8
Lalb_Chr13g0302271 Lupinus albus HOM05D000798 ORTHO05D000659 3.7e-08 61.2 38 65.8
Sed0012863 Sechium edule HOM05D000798 ORTHO05D000659 3.7e-08 61.2 34 67.6
Hund09176 Selenicereus undatus HOM05D000798 ORTHO05D000659 3.7e-08 61.2 38 63.2
Atru.chr7.1284 Acer truncatum HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 65.8
BcaC07g41940 Brassica carinata HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 65.8
A09p65860 Brassica napus HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 65.8
C08p49960 Brassica napus HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 65.8
BolC8t52524H Brassica oleracea HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 65.8
BraA09t41930Z Brassica rapa HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 65.8
Glyma.06G211300 Glycine max HOM05D000798 ORTHO05D000659 4.8e-08 60.8 38 68.4
Oeu048666.1 Olea europaea HOM05D000798 ORTHO05D000659 4.8e-08 60.8 41 61.0
Actinidia20333 Actinidia chinensis HOM05D000798 ORTHO05D000659 6.3e-08 60.5 35 68.6
Sc08g0007100 Simmondsia chinensis HOM05D000798 ORTHO05D000659 6.3e-08 60.5 38 63.2
AL1G18940 Arabidopsis lyrata HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 65.8
AT1G08510 Arabidopsis thaliana HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 65.8
COL.COLO4_34945 Corchorus olitorius HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 68.4
Duzib168G2125 Durio zibethinus HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 68.4
MD02G1042500 Malus domestica HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 68.4
MD02G1062000 Malus domestica HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 68.4
THA.LOC104826529 Tarenaya hassleriana HOM05D000798 ORTHO05D000659 8.2e-08 60.1 38 63.2
CARHR008400 Cardamine hirsuta HOM05D000798 ORTHO05D000659 1.1e-07 59.7 45 60.0
Ca_21020_v3 Cicer arietinum L. HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 65.8
Duzib150G1370 Durio zibethinus HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 65.8
Migut.K00469 Erythranthe guttata HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 68.4
Gohir.A07G003000 Gossypium hirsutum HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 65.8
Gohir.D07G003300 Gossypium hirsutum HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 65.8
Lsat_1_v5_gn_7_42901 Lactuca sativa HOM05D000798 ORTHO05D000659 1.1e-07 59.7 35 65.7
Lsat_1_v5_gn_8_94241 Lactuca sativa HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 68.4
SalBow1G7323 Salvia bowleyana HOM05D000798 ORTHO05D000659 1.1e-07 59.7 38 68.4
arahy.Tifrunner.gnm1.ann1.4E7QKU Arachis hypogaea HOM05D000798 ORTHO05D000659 1.4e-07 59.3 38 65.8
arahy.Tifrunner.gnm1.ann1.L4EP3N Arachis hypogaea HOM05D000798 ORTHO05D000659 1.4e-07 59.3 38 65.8
Potri.018G072700 Populus trichocarpa HOM05D000798 ORTHO05D000659 1.4e-07 59.3 38 65.8
VMungo1309G1031 Vigna mungo HOM05D000468 ORTHO05D000659 1.4e-07 59.3 38 65.8
Glyma.17G120400 Glycine max HOM05D000798 ORTHO05D000659 1.8e-07 58.9 38 63.2
MBI07_g18746_MAGBIO Magnolia biondii HOM05D000798 ORTHO05D000659 1.8e-07 58.9 38 63.2
Peaxi162Scf00546g00419 Petunia axillaris HOM05D000798 ORTHO05D000659 1.8e-07 58.9 38 68.4
Phvul.009G200200 Phaseolus vulgaris HOM05D000798 ORTHO05D000659 1.8e-07 58.9 38 63.2
Cfa003296 Carpinus fangiana HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 65.8
Haze_25673 Corylus avellana HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 65.8
MELO3C004540.2 Cucumis melo HOM05D000798 ORTHO05D000659 2.4e-07 58.5 34 64.7
CsaV3_2G002490 Cucumis sativus L. HOM05D000798 ORTHO05D000659 2.4e-07 58.5 34 64.7
HanXRQChr06g0180041 Helianthus annuus HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 65.8
Manes.03G066532 Manihot esculenta HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 65.8
Manes.16G064400 Manihot esculenta HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 65.8
Psat1g024600 Pisum sativum HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 63.2
Thecc.09G116200 Theobroma cacao HOM05D000798 ORTHO05D000659 2.4e-07 58.5 38 65.8
Duzib187G1245 Durio zibethinus HOM05D000798 ORTHO05D000659 3.1e-07 58.2 38 65.8
Gohir.A06G060100 Gossypium hirsutum HOM05D000798 ORTHO05D000659 3.1e-07 58.2 38 65.8
Gohir.D06G058300 Gossypium hirsutum HOM05D000798 ORTHO05D000659 3.1e-07 58.2 38 65.8
Gorai.010G068500 Gossypium raimondii HOM05D000798 ORTHO05D000659 3.1e-07 58.2 38 65.8
Nitab4.5_0029423g0010 Nicotiana tabacum HOM05D000798 ORTHO05D000659 3.1e-07 58.2 43 58.1
TPR.G10360 Trifolium pratense HOM05D000798 ORTHO05D000659 3.1e-07 58.2 38 63.2
TAR624G1035 Trochodendron aralioides HOM05D000798 ORTHO05D000659 3.1e-07 58.2 35 60.0
TAR636G2412 Trochodendron aralioides HOM05D000798 ORTHO05D000659 3.1e-07 58.2 35 62.9
vmacro20675 Vaccinium macrocarpon HOM05D000798 ORTHO05D000659 3.1e-07 58.2 38 65.8
Ah.14g081350 Amaranthus hybridus HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 60.5
MSTRG.10686 Avicennia marina HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 65.8
CSS0012682 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 68.4
CAN.G713.27 Capsicum annuum HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 63.2
CDE06G2261 Ceratophyllum demersum HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 60.5
CDE07G0473 Ceratophyllum demersum HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 60.5
Peaxi162Scf00361g00312 Petunia axillaris HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 68.4
Potri.006G155800 Populus trichocarpa HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 63.2
Potri.006G157200 Populus trichocarpa HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 63.2
Solyc12g006930.2 Solanum lycopersicum HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 65.8
Sopen12g002890 Solanum pennellii HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 65.8
PGSC0003DMG400001070 Solanum tuberosum HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 65.8
unitig_748.g7153 Utricularia gibba HOM05D000798 ORTHO05D000659 4.1e-07 57.8 38 65.8
BcaB07g34094 Brassica carinata HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 65.8
A06p05500 Brassica napus HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 65.8
C05p06610 Brassica napus HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 65.8
BolC5t29421H Brassica oleracea HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 65.8
BraA06t23758Z Brassica rapa HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 65.8
DCAR_028741 Daucus carota HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 63.2
ECA236G2704 Erigeron canadensis HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 60.5
Mapoly0023s0057 Marchantia polymorpha HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 63.2
PGR142G2222 Punica granatum HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 65.8
TWI34G0468 Tripterygium wilfordii HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 63.2
TAR383G0404 Trochodendron aralioides HOM05D000798 ORTHO05D000659 5.3e-07 57.4 38 63.2
Medtr4g112970 Medicago truncatula HOM05D000798 ORTHO05D000659 6.9e-07 57.0 38 63.2
Pp3c21_15300 Physcomitrium patens HOM05D000798 ORTHO05D000659 6.9e-07 57.0 38 65.8
Rhsim01G0090800 Rhododendron simsii HOM05D000798 ORTHO05D000659 6.9e-07 57.0 34 67.6
Sabra06G0123400 Salix brachista HOM05D000798 ORTHO05D000659 6.9e-07 57.0 38 63.2
TPR.G26759 Trifolium pratense HOM05D000798 ORTHO05D000659 6.9e-07 57.0 38 63.2
Ca_02545_v3 Cicer arietinum L. HOM05D000798 ORTHO05D000659 9.1e-07 56.6 38 63.2
DCAR_010439 Daucus carota HOM05D000798 ORTHO05D000659 9.1e-07 56.6 38 63.2
Psat4g042720 Pisum sativum HOM05D000798 ORTHO05D000659 9.1e-07 56.6 38 60.5
AagrBONN_evm.TU.Sc2ySwM_362.2713 Anthoceros agrestis HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 65.8
CANSAT56G3221 Cannabis sativa HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 63.2
Carub.0001s0787 Capsella rubella HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 63.2
Ciclev10008435m.g Citrus clementina HOM05D000798 ORTHO05D000659 1.2e-06 56.2 35 57.1
Dinv36596 Davidia involucrata HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 68.4
Glyma.04G151600 Glycine max HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 63.2
HanXRQChr05g0138201 Helianthus annuus HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 60.5
Pp3c18_15010 Physcomitrium patens HOM05D000798 ORTHO05D000659 1.2e-06 56.2 34 64.7
Sc18g0001000 Simmondsia chinensis HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 60.5
unitig_46.g18394 Utricularia gibba HOM05D000798 ORTHO05D000659 1.2e-06 56.2 38 60.5
DCAR_012090 Daucus carota HOM05D000798 ORTHO05D000659 1.5e-06 55.8 38 63.2
Nitab4.5_0005275g0030 Nicotiana tabacum HOM05D000798 ORTHO05D000659 1.5e-06 55.8 38 63.2
Eucgr.C01082 Eucalyptus grandis HOM05D000798 ORTHO05D000659 2.0e-06 55.5 38 65.8
Gohir.A08G240550 Gossypium hirsutum HOM05D000798 ORTHO05D000659 2.0e-06 55.5 38 60.5
Gohir.A13G197000 Gossypium hirsutum HOM05D000798 ORTHO05D000659 2.0e-06 55.5 35 60.0
Gohir.D08G261200 Gossypium hirsutum HOM05D000798 ORTHO05D000659 2.0e-06 55.5 38 60.5
Gohir.D13G202300 Gossypium hirsutum HOM05D000798 ORTHO05D000659 2.0e-06 55.5 35 60.0
Gorai.004G279300 Gossypium raimondii HOM05D000798 ORTHO05D000659 2.0e-06 55.5 38 60.5
Gorai.013G231200 Gossypium raimondii HOM05D000798 ORTHO05D000659 2.0e-06 55.5 35 60.0
Pp3c22_11160 Physcomitrium patens HOM05D000798 ORTHO05D000659 2.0e-06 55.5 35 60.0
Sabra18G0063900 Salix brachista HOM05D000798 ORTHO05D000659 2.0e-06 55.5 35 60.0
TAR629G1330 Trochodendron aralioides HOM05D000526 ORTHO05D000956 2.0e-06 55.5 35 57.1
unitig_37.g12648 Utricularia gibba HOM05D000798 ORTHO05D000659 2.0e-06 55.5 38 57.9
CiPaw.03G236000 Carya illinoinensis HOM05D000798 ORTHO05D000659 2.6e-06 55.1 38 57.9
Peaxi162Scf00199g00111 Petunia axillaris HOM05D000798 ORTHO05D000659 2.6e-06 55.1 38 68.4
Sabra15G0120300 Salix brachista HOM05D000798 ORTHO05D000659 2.6e-06 55.1 41 56.1
Gorai.001G003300 Gossypium raimondii HOM05D000798 ORTHO05D000659 3.4e-06 54.7 38 63.2
GSVIVG01008575001 Vitis vinifera HOM05D000798 ORTHO05D000659 3.4e-06 54.7 38 57.9
DCAR_002003 Daucus carota HOM05D000798 ORTHO05D002621 4.5e-06 54.3 38 63.2
SMO364G0464 Selaginella moellendorffii HOM05D000798 ORTHO05D000659 4.5e-06 54.3 34 61.8
TAR626G1740 Trochodendron aralioides HOM05D000798 ORTHO05D000659 4.5e-06 54.3 34 58.8
Mapoly0023s0056 Marchantia polymorpha HOM05D000798 ORTHO05D000659 5.9e-06 53.9 38 57.9
SEGI_17205 Sequoiadendron giganteum HOM05D000798 ORTHO05D000659 5.9e-06 53.9 38 55.3
HPP92_000344 Vanilla planifolia HOM05D000798 ORTHO05D000659 5.9e-06 53.9 38 57.9
CiPaw.04G167300 Carya illinoinensis HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 60.5
CiPaw.11G005100 Carya illinoinensis HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 57.9
MBI01_g13573_MAGBIO Magnolia biondii HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 55.3
Mapoly0168s0018 Marchantia polymorpha HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 60.5
Prupe.5G148400 Prunus persica HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 57.9
Solyc03g097390.3 Solanum lycopersicum HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 55.3
Sopen03g028150 Solanum pennellii HOM05D000798 ORTHO05D000659 7.7e-06 53.5 38 55.3


User provided reference genes

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