Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1892.5 1011 100.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1885.9 1011 99.6
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1261.9 1013 71.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1237.2 1051 67.6
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1227.6 1053 67.4
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1224.5 1030 67.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1203.0 1064 65.6
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 0.0e+00 1192.2 1021 69.2
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1167.9 1018 65.9
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1166.0 1060 64.1
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1163.7 1046 64.8
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1161.7 1019 65.8
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1150.2 1032 64.6
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1149.0 1034 64.7
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1147.5 1053 63.7
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1142.5 1023 64.6
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1140.6 1056 62.6
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1140.6 1077 62.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1134.8 1029 64.3
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 0.0e+00 1132.1 1006 64.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1130.2 1082 62.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1129.4 1053 64.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1125.9 1056 62.8
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1125.2 1021 64.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1124.8 1055 63.0
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1124.0 1029 63.9
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1122.5 1029 63.8
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 0.0e+00 1117.8 1017 64.3
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1117.4 976 65.4
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1116.7 1048 62.8
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 1115.9 1193 57.2
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 0.0e+00 1114.4 1014 63.0
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1114.0 1021 64.3
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 0.0e+00 1113.6 1039 63.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 0.0e+00 1113.6 990 64.9
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1112.8 878 72.4
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 0.0e+00 1112.1 984 65.0
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1108.6 1010 63.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1107.4 1029 64.2
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1107.4 1021 63.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 0.0e+00 1104.0 1024 63.0
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 0.0e+00 1103.2 1028 62.6
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1097.4 1017 63.5
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1096.6 1078 61.4
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 0.0e+00 1094.3 1038 62.4
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 0.0e+00 1094.0 1042 61.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1094.0 1046 61.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1092.4 1038 61.8
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 0.0e+00 1090.5 1034 62.6
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1088.6 1015 63.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 0.0e+00 1088.2 1038 61.9
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1087.8 1015 63.1
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 0.0e+00 1087.4 1084 59.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1081.6 1023 62.3
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 0.0e+00 1080.9 1029 62.3
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 0.0e+00 1077.4 1041 62.1
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1075.1 1051 61.1
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.8e-311 1072.0 1083 58.6
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.5e-311 1071.6 1025 61.5
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.3e-310 1067.8 909 66.2
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 5.8e-309 1064.3 1023 62.1
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 7.6e-309 1063.9 1065 60.2
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 7.8e-306 1053.9 1031 61.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.0e-305 1053.5 858 69.5
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 6.6e-305 1050.8 863 68.7
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.9e-304 1049.3 1050 60.4
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 6.2e-303 1044.3 1047 59.1
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.1e-302 1043.5 1038 58.3
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.1e-302 1043.5 1042 60.2
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.1e-302 1043.5 1022 60.7
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.2e-302 1041.2 1034 58.8
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.8e-302 1040.8 1082 58.5
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 6.4e-300 1034.2 1061 60.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.1e-296 1023.5 1025 60.5
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.5e-296 1022.3 1019 60.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.3e-295 1020.0 1038 59.0
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 7.1e-291 1004.2 1022 59.1
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 5.6e-288 994.6 1022 58.5
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 5.6e-288 994.6 1045 58.3
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.0e-281 973.8 872 62.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.6e-279 966.5 1022 58.0
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 4.8e-279 964.9 1031 57.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 6.2e-279 964.5 1041 57.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 3.1e-278 962.2 908 62.4
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 4.5e-277 958.4 1036 56.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.9e-275 953.0 1021 57.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.5e-275 952.6 1053 54.8
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.9e-273 945.3 1041 56.1
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.6e-271 939.9 1022 57.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.7e-268 929.9 1016 55.5
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.9e-267 926.4 871 61.1
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.3e-265 920.2 1026 55.9
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 6.7e-265 917.9 949 57.6
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 4.2e-259 898.7 1072 53.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.8e-257 893.3 830 62.8
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.3e-257 892.9 1026 55.1
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 3.0e-257 892.5 1018 52.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 8.8e-257 891.0 620 76.1
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 9.4e-251 870.9 695 71.4
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 6.3e-247 858.2 1041 50.2
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.4e-241 840.5 1063 50.0
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 9.8e-224 781.2 1008 51.2
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 6.6e-212 741.9 588 69.2
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 8.1e-202 708.4 998 46.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-199 701.0 599 65.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 7.1e-198 695.3 494 78.9
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.4e-193 681.0 922 44.3
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 7.8e-189 665.2 1154 39.3
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.6e-178 629.8 885 46.4
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 3.1e-177 626.7 1044 41.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.6e-173 614.4 558 63.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.8e-170 603.6 598 60.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.8e-169 600.9 730 51.6
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.3e-156 558.1 644 52.8
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.4e-155 552.4 989 38.5
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.9e-150 537.7 475 68.0
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 5.2e-132 476.5 915 36.9
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 3.7e-106 390.6 1096 33.0
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.2e-98 364.8 358 57.3
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 8.6e-95 352.8 291 68.7
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.2e-83 315.8 618 39.5
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 2.8e-77 294.7 580 39.1
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.8e-74 284.3 844 31.5
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 9.0e-68 263.1 203 73.4
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.2e-66 258.5 227 69.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.5e-62 245.7 952 27.4
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.9e-58 231.5 253 60.9
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.6e-56 224.2 200 64.5
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-54 218.8 180 67.2
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 2.1e-48 198.7 227 65.2
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 5.7e-38 164.1 174 55.7
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.2e-37 162.2 212 57.5
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 6.1e-32 144.1 151 56.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.7e-29 136.0 132 59.1
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 2.4e-28 132.1 117 62.4
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.0e-27 129.0 215 48.4
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.8e-20 105.9 134 45.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 6.5e-18 97.4 57 77.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-17 96.7 81 63.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.9e-17 95.9 51 86.3
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.8e-12 79.3 140 42.1
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 6.5e-10 70.9 211 36.0
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 39 71.8
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 39 71.8
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 1.0e-07 63.5 108 44.4
Aqoxy1G00348 Aquilegia oxysepala HOM05D005068 ORTHO05D078765 1.4e-07 63.2 82 52.4
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 4.0e-07 61.6 45 57.8
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 4.0e-07 61.6 39 69.2
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 4.0e-07 61.6 39 69.2
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 5.7e-06 57.8 50 56.0
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 9.7e-06 57.0 48 58.3


User provided reference genes

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