Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048434 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 1.9e-116 422.5 223 100.0
CSS0013660 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 2.1e-102 375.9 231 88.7
CSS0033352 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 5.1e-101 371.3 221 91.4
RhsimUnG0251100 Rhododendron simsii HOM05D005753 ORTHO05D007034 1.2e-52 210.7 225 57.3
Dinv40749 Davidia involucrata HOM05D005753 ORTHO05D007034 2.4e-50 203.0 235 57.0
Actinidia35339 Actinidia chinensis HOM05D005753 ORTHO05D007034 5.2e-45 185.3 218 56.4
Dinv22267 Davidia involucrata HOM05D005753 ORTHO05D007034 3.0e-40 169.5 160 62.5
Lj1A871G90 Lonicera japonica HOM05D005753 ORTHO05D007034 1.1e-39 167.5 232 47.8
vmacro09719 Vaccinium macrocarpon HOM05D005753 ORTHO05D007034 2.0e-36 156.8 273 42.1
Cfa020355 Carpinus fangiana HOM05D005753 ORTHO05D007034 1.7e-32 143.7 234 44.0
GSVIVG01037637001 Vitis vinifera HOM05D005753 ORTHO05D007034 8.7e-32 141.4 235 43.8
Haze_09667 Corylus avellana HOM05D005753 ORTHO05D007034 6.2e-30 135.2 161 52.2
Gorai.009G437800 Gossypium raimondii HOM05D005753 ORTHO05D007034 5.3e-29 132.1 210 44.8
Thecc.07G038900 Theobroma cacao HOM05D005753 ORTHO05D007034 6.9e-29 131.7 235 41.7
Gohir.D05G369100 Gossypium hirsutum HOM05D005753 ORTHO05D007034 9.0e-29 131.3 210 44.8
Peaxi162Scf00964g00029 Petunia axillaris HOM05D005753 ORTHO05D007034 1.5e-28 130.6 177 46.9
TAR629G3535 Trochodendron aralioides HOM05D005753 ORTHO05D007034 2.6e-28 129.8 232 42.7
Nn1g03551 Nelumbo nucifera HOM05D005753 ORTHO05D007034 4.5e-28 129.0 233 42.5
MD03G1202100 Malus domestica HOM05D005753 ORTHO05D007034 5.8e-28 128.6 203 46.3
Atru.chr2.3344 Acer truncatum HOM05D005753 ORTHO05D007034 2.9e-27 126.3 219 42.5
Ciclev10007877m.g Citrus clementina HOM05D005753 ORTHO05D007034 4.9e-27 125.6 230 40.4
QL08p010535 Quercus lobata HOM05D005753 ORTHO05D007034 6.4e-27 125.2 232 42.7
Oeu062590.1 Olea europaea HOM05D005753 ORTHO05D007034 1.1e-26 124.4 236 40.3
RcHm_v2.0_Chr5g0039281 Rosa chinensis HOM05D005753 ORTHO05D007034 1.1e-26 124.4 211 46.0
Actinidia10731 Actinidia chinensis HOM05D005753 ORTHO05D007034 1.4e-26 124.0 177 49.7
Manes.15G072600 Manihot esculenta HOM05D005753 ORTHO05D007034 1.4e-26 124.0 232 41.4
Sopen07g032730 Solanum pennellii HOM05D005753 ORTHO05D007034 7.1e-26 121.7 214 39.7
PGSC0003DMG400022322 Solanum tuberosum HOM05D005753 ORTHO05D007034 7.1e-26 121.7 172 44.2
FAN16G1141 Fragaria x ananassa HOM05D005753 ORTHO05D007034 1.2e-25 120.9 211 42.2
Nitab4.5_0003812g0080 Nicotiana tabacum HOM05D005753 ORTHO05D004173 1.2e-25 120.9 174 42.0
Nitab4.5_0001913g0030 Nicotiana tabacum HOM05D005753 ORTHO05D007034 2.1e-25 120.2 166 45.8
Solyc07g064550.3 Solanum lycopersicum HOM05D005753 ORTHO05D007034 3.5e-25 119.4 214 39.7
FvH4_3g22540 Fragaria vesca HOM05D005753 ORTHO05D007034 3.9e-24 115.9 211 40.8
Potri.011G138600 Populus trichocarpa HOM05D005753 ORTHO05D007034 3.9e-24 115.9 233 40.3
CAN.G337.126 Capsicum annuum HOM05D005753 ORTHO05D007034 6.7e-24 115.2 175 41.7
Duzib213G1063 Durio zibethinus HOM05D005753 ORTHO05D007034 1.1e-23 114.4 175 44.6
FAN11G3996 Fragaria x ananassa HOM05D005753 ORTHO05D007034 1.5e-23 114.0 211 40.3
FAN25G0533 Fragaria x ananassa HOM05D005753 ORTHO05D007034 1.5e-23 114.0 211 40.3
Potri.001G423200 Populus trichocarpa HOM05D005753 ORTHO05D007034 1.5e-23 114.0 236 38.6
Manes.03G128700 Manihot esculenta HOM05D005753 ORTHO05D007034 9.6e-23 111.3 228 39.9
ClCG10G005460 Citrullus lanatus HOM05D005753 ORTHO05D007034 6.2e-22 108.6 213 40.8
CsaV3_3G005190 Cucumis sativus L. HOM05D005753 ORTHO05D007034 6.2e-22 108.6 205 40.5
COL.COLO4_09655 Corchorus olitorius HOM05D005753 ORTHO05D007034 1.1e-21 107.8 239 37.2
FAN21G2493 Fragaria x ananassa HOM05D005753 ORTHO05D007034 1.1e-21 107.8 211 39.3
Oeu007583.4 Olea europaea HOM05D005753 ORTHO05D007034 1.4e-21 107.5 163 44.2
MELO3C025386.2 Cucumis melo HOM05D005753 ORTHO05D007034 3.1e-21 106.3 205 40.5
Cpa.g.sc97.11 Carica papaya HOM05D005753 ORTHO05D007034 1.5e-20 104.0 90 60.0
DCAR_022557 Daucus carota HOM05D005753 ORTHO05D007034 3.4e-20 102.8 228 38.6
Sed0020363 Sechium edule HOM05D005753 ORTHO05D007034 7.6e-20 101.7 209 38.8
Sabra11G0124200 Salix brachista HOM05D005753 ORTHO05D007034 1.7e-19 100.5 266 36.8
Cc05_g13740 Coffea canephora HOM05D005753 ORTHO05D007034 2.2e-19 100.1 226 38.9
ECA236G0832 Erigeron canadensis HOM05D005753 ORTHO05D007034 2.2e-19 100.1 113 49.6
Prupe.4G211900 Prunus persica HOM05D005753 ORTHO05D007034 2.2e-19 100.1 199 40.7
CiPaw.11G188600 Carya illinoinensis HOM05D005753 ORTHO05D007034 4.9e-19 99.0 93 55.9
TWI38G0917 Tripterygium wilfordii HOM05D005753 ORTHO05D007034 1.4e-18 97.4 234 37.6
Sabra16G0289400 Salix brachista HOM05D005753 ORTHO05D007034 2.4e-18 96.7 240 35.0
MSTRG.15152 Avicennia marina HOM05D005753 ORTHO05D007034 9.3e-18 94.7 214 34.1
Phvul.006G042100 Phaseolus vulgaris HOM05D005753 ORTHO05D007034 2.1e-17 93.6 223 38.6
Lsat_1_v5_gn_7_108641 Lactuca sativa HOM05D005753 ORTHO05D007034 2.7e-17 93.2 196 37.8
Lalb_Chr15g0081011 Lupinus albus HOM05D005753 ORTHO05D007034 6.0e-17 92.0 227 34.4
Glyma.18G099000 Glycine max HOM05D005753 ORTHO05D007034 1.3e-16 90.9 228 37.3
EL10Ac4g07817 Beta vulgaris HOM05D005753 ORTHO05D007034 1.8e-16 90.5 159 44.0
Migut.M01771 Erythranthe guttata HOM05D005753 ORTHO05D007034 3.0e-16 89.7 204 35.3
MBI02_g22112_MAGBIO Magnolia biondii HOM05D005753 ORTHO05D007034 3.0e-16 89.7 169 36.7
Psat0s6641g0040 Pisum sativum HOM05D005753 ORTHO05D007034 3.9e-16 89.4 145 43.4
Ah.06g186160 Amaranthus hybridus HOM05D005753 ORTHO05D007034 1.5e-15 87.4 99 50.5
Aqoxy4G01822 Aquilegia oxysepala HOM05D005753 ORTHO05D007034 4.3e-15 85.9 231 34.6
Psat5g180520 Pisum sativum HOM05D005753 ORTHO05D007034 4.3e-15 85.9 219 33.8
TWI38G1056 Tripterygium wilfordii HOM05D005753 ORTHO05D007034 4.3e-15 85.9 238 34.5
HanXRQChr15g0494351 Helianthus annuus HOM05D005753 ORTHO05D007034 7.4e-15 85.1 101 54.5
arahy.Tifrunner.gnm1.ann1.F03U7D Arachis hypogaea HOM05D005753 ORTHO05D007034 9.6e-15 84.7 227 33.9
Ca_14723_v3 Cicer arietinum L. HOM05D005753 ORTHO05D007034 2.1e-14 83.6 234 34.2
Psat1g183360 Pisum sativum HOM05D005753 ORTHO05D007034 2.1e-14 83.6 102 47.1
CANSAT78G0206 Cannabis sativa HOM05D005753 ORTHO05D007034 2.8e-14 83.2 171 38.0
Carub.0007s1385 Capsella rubella HOM05D005753 ORTHO05D007034 2.8e-14 83.2 138 37.7
Sc07g0002780 Simmondsia chinensis HOM05D005753 ORTHO05D007034 3.7e-14 82.8 158 38.6
Glyma.08G315100 Glycine max HOM05D005753 ORTHO05D007034 1.4e-13 80.9 221 35.3
arahy.Tifrunner.gnm1.ann1.2B36BL Arachis hypogaea HOM05D005753 ORTHO05D007034 1.8e-13 80.5 227 32.6
AT5G54920 Arabidopsis thaliana HOM05D005753 ORTHO05D007034 5.3e-13 79.0 138 36.2
BcaC06g32718 Brassica carinata HOM05D005753 ORTHO05D007034 6.9e-13 78.6 91 44.0
AT4G26990 Arabidopsis thaliana HOM05D005753 ORTHO05D007034 1.2e-12 77.8 180 32.2
AUR62020456 Chenopodium quinoa HOM05D005753 ORTHO05D007034 1.5e-12 77.4 138 44.2
Eucgr.F00770 Eucalyptus grandis HOM05D005753 ORTHO05D007034 1.5e-12 77.4 216 32.9
PSO832G3698 Papaver somniferum HOM05D005753 ORTHO05D007034 1.5e-12 77.4 209 33.5
AUR62015759 Chenopodium quinoa HOM05D005753 ORTHO05D007034 2.0e-12 77.0 145 42.8
BcaNung03572 Brassica carinata HOM05D005753 ORTHO05D007034 3.4e-12 76.3 157 35.7
PSO210G3457 Papaver somniferum HOM05D005753 ORTHO05D007034 4.5e-12 75.9 209 33.5
Medtr3g051270 Medicago truncatula HOM05D005753 ORTHO05D007034 1.0e-11 74.7 237 32.9
ATR0752G139 Amborella trichopoda HOM05D005753 ORTHO05D007034 1.7e-11 73.9 149 32.2
CARHR234600 Cardamine hirsuta HOM05D005753 ORTHO05D007034 4.9e-11 72.4 177 31.6
Sp7g24940 Schrenkiella parvula HOM05D005753 ORTHO05D007034 4.9e-11 72.4 247 27.9
Thhalv10025144m.g Eutrema salsugineum HOM05D005753 ORTHO05D007034 8.4e-11 71.6 175 31.4
Lj6g0004879 Lotus japonicus HOM05D005753 ORTHO05D007034 2.5e-10 70.1 203 33.5
AL8G30390 Arabidopsis lyrata HOM05D005753 ORTHO05D007034 1.2e-09 67.8 221 31.2
A01p18150 Brassica napus HOM05D005753 ORTHO05D007034 1.2e-09 67.8 184 32.6
BraA01t01770Z Brassica rapa HOM05D005753 ORTHO05D007034 1.2e-09 67.8 184 32.6
CARHR268260 Cardamine hirsuta HOM05D005753 ORTHO05D007034 2.7e-09 66.6 141 36.9
A03p57000 Brassica napus HOM05D005753 ORTHO05D007034 3.5e-09 66.2 146 34.9
Carub.0008s1522 Capsella rubella HOM05D005753 ORTHO05D007034 4.6e-09 65.9 199 31.2
TPR.G16572 Trifolium pratense HOM05D005753 ORTHO05D007034 6.0e-09 65.5 244 29.9
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 1.8e-08 63.9 136 34.6
PGR083G0792 Punica granatum HOM05D005753 ORTHO05D007034 3.0e-08 63.2 139 36.7
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 3.9e-08 62.8 136 34.6
Aa31LG5G10420 Aethionema arabicum HOM05D005753 ORTHO05D007034 6.7e-08 62.0 129 36.4
C01p23110 Brassica napus HOM05D005753 ORTHO05D007034 1.9e-07 60.5 133 35.3
BolC1t02245H Brassica oleracea HOM05D005753 ORTHO05D007034 1.9e-07 60.5 162 32.1
Psat1g117840 Pisum sativum HOM05D005753 ORTHO05D007034 2.5e-07 60.1 140 38.6
THA.LOC104818102 Tarenaya hassleriana HOM05D005753 ORTHO05D007034 2.5e-07 60.1 186 33.9
Duzib170G0684 Durio zibethinus HOM05D005753 ORTHO05D007034 3.3e-07 59.7 206 32.0
HanXRQChr16g0515041 Helianthus annuus HOM05D005753 ORTHO05D007034 3.3e-07 59.7 77 42.9
AL7G25840 Arabidopsis lyrata HOM05D005753 ORTHO05D007034 1.6e-06 57.4 178 29.2
Hund02053 Selenicereus undatus HOM05D005753 ORTHO05D007034 6.3e-06 55.5 180 28.3


User provided reference genes

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