Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.1e-253 879.4 426 100.0
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.7e-225 785.8 454 86.8
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.0e-223 778.9 454 86.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 4.6e-215 751.1 454 81.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.3e-206 723.0 454 78.6
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 5.1e-206 721.1 454 79.1
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 8.9e-203 710.3 454 77.3
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 5.1e-198 694.5 434 79.7
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 7.3e-197 690.6 453 75.5
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.6e-196 689.5 453 75.5
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 3.6e-196 688.3 454 75.6
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 4.7e-196 688.0 455 75.4
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.4e-195 685.6 453 74.6
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 2.6e-194 682.2 454 74.4
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 4.4e-194 681.4 454 74.4
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 7.6e-194 680.6 454 74.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 2.2e-193 679.1 452 74.8
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 3.2e-192 675.2 446 73.5
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 4.2e-192 674.9 454 72.2
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 2.1e-191 672.5 453 73.1
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.7e-191 672.2 454 73.3
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 7.8e-191 670.6 448 73.2
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.3e-190 669.8 454 73.3
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.3e-190 669.8 453 72.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.7e-190 669.5 454 73.3
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 1.7e-190 669.5 448 73.4
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.0e-190 668.7 454 73.1
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 3.9e-190 668.3 452 71.9
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 3.9e-190 668.3 455 73.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 5.1e-190 667.9 452 72.6
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 5.1e-190 667.9 446 73.3
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 6.6e-190 667.5 452 72.6
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 8.7e-190 667.2 451 72.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 3.3e-189 665.2 455 72.3
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 3.3e-189 665.2 450 72.7
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 7.3e-189 664.1 441 75.3
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.3e-189 664.1 454 71.6
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.8e-188 662.1 452 73.0
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.8e-188 662.1 446 72.4
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 3.6e-188 661.8 454 70.7
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 4.8e-188 661.4 455 71.4
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.8e-187 659.4 435 75.4
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 2.4e-187 659.1 450 72.9
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.1e-187 658.7 452 72.8
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.0e-187 658.3 455 71.4
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 3.4e-186 655.2 452 71.9
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 4.5e-186 654.8 454 72.2
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 5.8e-186 654.4 451 71.8
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 9.9e-186 653.7 452 70.6
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.3e-185 653.3 469 69.9
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 3.8e-185 651.7 452 70.1
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 4.9e-185 651.4 454 72.5
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 2.4e-184 649.0 440 71.8
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 3.2e-184 648.7 454 69.2
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 5.4e-184 647.9 446 71.1
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 7.1e-184 647.5 452 69.7
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.2e-183 646.7 453 70.4
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.0e-182 643.7 487 68.6
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.3e-182 643.3 435 73.6
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.9e-181 639.4 456 70.4
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.9e-181 639.4 452 69.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.3e-181 638.3 450 68.7
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 7.4e-181 637.5 453 68.7
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 9.6e-181 637.1 452 69.7
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.1e-180 636.0 437 71.2
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.7e-180 635.2 441 70.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 4.8e-180 634.8 452 67.9
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 6.2e-180 634.4 450 71.6
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.4e-179 633.3 451 68.5
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 9.0e-179 630.6 451 68.5
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 9.0e-179 630.6 462 68.0
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.2e-178 630.2 460 67.0
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.2e-178 630.2 451 68.5
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 5.8e-178 627.9 452 68.4
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 7.6e-178 627.5 451 68.1
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 7.6e-178 627.5 437 70.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.3e-177 626.7 435 72.2
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 2.2e-177 625.9 428 71.0
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.9e-176 622.9 452 67.9
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.9e-176 622.9 410 74.4
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 5.5e-176 621.3 450 70.4
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 4.6e-175 618.2 435 70.6
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 4.6e-175 618.2 430 70.0
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 5.1e-174 614.8 451 67.6
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.7e-174 614.4 452 68.6
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-171 606.7 478 64.9
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.5e-170 603.2 462 66.5
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.8e-169 598.6 446 65.5
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.2e-167 593.6 446 65.5
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 3.4e-162 575.5 510 60.8
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 7.6e-162 574.3 420 67.9
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 7.2e-160 567.8 447 62.2
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.8e-156 555.8 453 60.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.1e-155 552.0 485 57.9
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 5.3e-155 551.6 454 62.8
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.6e-151 540.0 548 55.3
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.6e-151 540.0 435 64.1
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 3.3e-149 532.3 407 66.8
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.1e-147 527.3 395 66.6
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 9.1e-147 524.2 483 58.8
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 1.2e-146 523.9 370 71.6
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 3.4e-146 522.3 378 69.8
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 4.2e-144 515.4 454 59.3
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.6e-138 496.9 453 54.7
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.5e-138 495.4 452 58.0
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.3e-137 493.8 453 55.8
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.8e-134 483.4 439 56.7
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.6e-133 479.6 471 54.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.1e-131 472.6 449 52.8
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 9.4e-128 461.1 435 56.1
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.9e-122 441.8 444 51.1
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.0e-117 426.8 458 48.9
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 6.8e-110 401.7 436 49.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.3e-105 387.5 274 67.9
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 6.8e-102 375.2 203 86.2
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.4e-99 366.7 251 70.9
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 4.7e-95 352.4 202 79.7
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 5.1e-89 332.4 222 75.2
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.7e-84 317.4 462 38.5
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 3.8e-84 316.2 378 41.3
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 1.1e-83 314.7 278 59.4
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.6e-82 310.8 229 70.3
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 8.1e-79 298.5 523 34.0
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.8e-63 246.1 174 71.8
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.3e-60 238.0 197 62.9
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.5e-48 197.2 163 57.7
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 9.0e-46 188.7 144 63.2
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 4.2e-43 179.9 95 80.0
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.0e-41 175.3 196 48.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.8e-41 174.5 151 59.6
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 3.7e-39 166.8 120 63.3
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.8e-38 164.5 139 56.8
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 9.1e-38 162.2 428 29.2
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.9e-36 157.1 146 54.8
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 3.6e-34 150.2 253 37.2
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 9.7e-32 142.1 151 51.0
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.1e-30 138.7 103 63.1
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 7.0e-30 136.0 93 66.7
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.8e-25 121.3 119 54.6
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 1.8e-25 121.3 113 57.5
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.0e-24 117.9 133 48.9
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.2e-23 112.5 99 53.5
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 4.5e-21 106.7 132 47.0
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 2.6e-16 90.9 73 61.6
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 7.7e-13 79.3 67 56.7
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 7.2e-11 72.8 43 74.4
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.2e-08 65.5 51 60.8
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 3.4e-08 63.9 75 48.0
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.4e-06 58.5 45 66.7
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.1e-06 57.4 37 67.6


User provided reference genes

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