Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.3e-37 158.3 74 100.0
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 9.9e-17 89.7 83 56.6
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 4.2e-15 84.3 74 58.1
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.1e-15 83.6 69 62.3
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.5e-14 81.3 87 55.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.9e-14 80.1 82 53.7
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.9e-14 80.1 85 54.1
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.9e-14 80.1 83 50.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.3e-13 79.3 85 51.8
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.8e-13 79.0 68 60.3
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.3e-13 78.6 76 55.3
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 3.0e-13 78.2 87 52.9
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.0e-13 78.2 82 52.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 3.9e-13 77.8 66 62.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 5.1e-13 77.4 85 50.6
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 6.7e-13 77.0 85 50.6
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.7e-13 76.6 82 52.4
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.7e-13 76.6 82 52.4
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 8.7e-13 76.6 85 52.9
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.5e-12 75.9 76 55.3
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.5e-12 75.9 88 52.3
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.9e-12 75.5 72 59.7
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.5e-12 75.1 72 56.9
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.3e-12 74.3 90 47.8
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 4.3e-12 74.3 72 54.2
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.3e-11 72.8 67 59.7
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.6e-11 72.4 70 54.3
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.6e-11 72.4 76 53.9
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.6e-11 72.4 74 52.7
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.6e-11 72.4 69 58.0
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 2.1e-11 72.0 78 51.3
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.1e-11 72.0 72 50.0
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.8e-11 71.6 75 48.0
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.8e-11 71.6 75 48.0
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 2.8e-11 71.6 73 49.3
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.8e-11 71.6 72 54.2
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.7e-11 71.2 70 57.1
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 4.8e-11 70.9 72 55.6
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.8e-11 70.9 71 54.9
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 6.2e-11 70.5 76 51.3
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.1e-10 69.7 78 48.7
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.1e-10 69.7 72 52.8
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.1e-10 69.7 77 51.9
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.8e-10 68.9 66 57.6
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.8e-10 68.9 69 52.2
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.8e-10 68.9 79 50.6
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.4e-10 68.6 78 50.0
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.4e-10 68.6 78 50.0
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 2.4e-10 68.6 74 52.7
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.4e-10 68.6 69 52.2
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.1e-10 68.2 87 44.8
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.1e-10 68.2 76 51.3
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 3.1e-10 68.2 72 52.8
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.0e-10 67.8 84 48.8
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 4.0e-10 67.8 65 53.8
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 6.9e-10 67.0 80 45.0
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 6.9e-10 67.0 67 52.2
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 6.9e-10 67.0 89 46.1
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 9.0e-10 66.6 74 50.0
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 9.0e-10 66.6 70 54.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.2e-09 66.2 65 49.2
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 2.0e-09 65.5 65 47.7
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 2.0e-09 65.5 65 47.7
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.0e-09 65.5 63 52.4
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.0e-09 65.5 77 49.4
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.6e-09 65.1 74 52.7
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.6e-09 65.1 72 52.8
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.4e-09 64.7 71 52.1
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.4e-09 64.7 67 50.7
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 4.5e-09 64.3 77 49.4
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 4.5e-09 64.3 74 48.6
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 7.6e-09 63.5 74 50.0
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 7.6e-09 63.5 74 50.0
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 7.6e-09 63.5 68 51.5
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.0e-08 63.2 82 48.8
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-08 62.8 82 46.3
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.3e-08 62.8 75 49.3
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 1.3e-08 62.8 78 47.4
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.3e-08 62.8 82 46.3
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.7e-08 62.4 74 45.9
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.7e-08 62.4 72 50.0
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.7e-08 62.4 78 48.7
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 2.2e-08 62.0 75 49.3
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 2.2e-08 62.0 76 47.4
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.9e-08 61.6 74 47.3
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.8e-08 61.2 68 51.5
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 3.8e-08 61.2 58 56.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 4.9e-08 60.8 69 49.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.9e-08 60.8 82 45.1
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 8.4e-08 60.1 75 46.7
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 8.4e-08 60.1 72 47.2
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 8.4e-08 60.1 66 51.5
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.1e-07 59.7 75 41.3
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.4e-07 59.3 67 50.7
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.4e-07 59.3 67 50.7
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.5e-07 58.5 93 38.7
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.5e-07 58.5 69 49.3
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 2.5e-07 58.5 72 50.0
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 2.5e-07 58.5 69 46.4
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 3.2e-07 58.2 75 46.7
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.2e-07 58.2 66 48.5
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 4.2e-07 57.8 93 38.7
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 4.2e-07 57.8 78 43.6
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.2e-07 57.8 69 49.3
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.2e-07 57.8 69 50.7
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 5.5e-07 57.4 93 38.7
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 5.5e-07 57.4 93 38.7
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.5e-07 57.4 69 50.7
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 5.5e-07 57.4 75 45.3
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.3e-07 56.6 69 49.3
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.2e-06 56.2 85 40.0
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.2e-06 56.2 72 44.4
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.2e-06 56.2 64 48.4
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.6e-06 55.8 72 45.8
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.6e-06 55.8 92 37.0
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 1.6e-06 55.8 68 47.1
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.6e-06 55.8 94 37.2
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 2.1e-06 55.5 81 42.0
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.1e-06 55.5 93 41.9
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 2.1e-06 55.5 73 42.5
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 2.7e-06 55.1 94 36.2
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 2.7e-06 55.1 69 47.8
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.5e-06 54.7 80 41.2
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.5e-06 54.7 73 41.1
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 3.5e-06 54.7 69 42.0
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 4.6e-06 54.3 77 44.2
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 4.6e-06 54.3 77 44.2
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 4.6e-06 54.3 67 52.2
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.6e-06 54.3 68 44.1
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.6e-06 54.3 68 44.1
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.6e-06 54.3 76 40.8
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 6.0e-06 53.9 68 38.2
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 7.9e-06 53.5 73 41.1
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 7.9e-06 53.5 88 37.5


User provided reference genes

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