Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 5.6e-103 377.5 175 100.0
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 95.4
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.9e-99 365.2 175 95.4
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 95.4
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 6.5e-99 364.0 173 95.4
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 95.4
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.9e-98 362.5 175 93.7
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.9e-98 362.5 175 93.7
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 4.2e-98 361.3 175 92.6
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.1
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 7.1e-98 360.5 174 93.7
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.6
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.6
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.6
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 92.6
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.6e-97 359.4 173 94.2
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 92.0
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 93.1
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 2.1e-97 359.0 175 93.1
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.0
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.0
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.0
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.6
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 93.7
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.0
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 93.1
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 93.1
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 6.0e-97 357.5 174 93.1
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 93.1
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 93.7
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.6
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.6
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.0
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 7.9e-97 357.1 172 93.6
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.6
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 93.1
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 92.6
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 91.4
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 94.9
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 92.6
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.9
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 91.4
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 92.0
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 91.4
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 91.4
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 91.4
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.0
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.9
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 3.9e-96 354.8 174 91.4
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 91.4
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 90.9
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 90.9
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 5.1e-96 354.4 172 93.0
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 92.0
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 6.7e-96 354.0 174 91.4
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 91.4
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.3
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 90.3
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 90.3
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 89.7
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 1.1e-95 353.2 173 92.5
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 91.4
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 91.4
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 89.7
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 89.7
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.9
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.9
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 90.3
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 90.3
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 89.7
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 90.3
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 90.3
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 4.3e-95 351.3 171 91.8
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.7
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 89.7
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 89.7
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 89.7
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 89.7
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 89.7
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 9.6e-95 350.1 172 90.1
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 9.6e-95 350.1 172 90.1
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 90.3
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 90.9
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 89.1
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 1.3e-94 349.7 174 89.7
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 89.1
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 1.6e-94 349.4 174 88.5
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 2.8e-94 348.6 175 89.1
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 93.1
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 89.1
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 89.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 8.2e-94 347.1 174 90.8
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 8.2e-94 347.1 175 89.1
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 88.6
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 5.8e-92 340.9 173 90.8
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 2.9e-91 338.6 174 87.4
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 3.5e-89 331.6 175 86.9
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 1.0e-88 330.1 244 66.8
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 5.1e-88 327.8 175 84.0
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 8.7e-88 327.0 174 83.9
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.9e-87 325.9 174 82.8
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 1.5e-84 316.2 173 83.2
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 1.4e-82 309.7 181 82.9
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 1.6e-81 306.2 150 91.3
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 6.1e-81 304.3 168 79.2
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 3.7e-78 295.0 166 78.3
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 8.2e-78 293.9 175 73.7
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 5.5e-74 281.2 132 95.5
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 7.9e-73 277.3 165 69.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 7.9e-73 277.3 131 94.7
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 1.4e-72 276.6 131 94.7
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 1.1e-71 273.5 167 79.0
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 1.1e-66 256.9 164 68.9
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 1.5e-63 246.5 125 89.6
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 7.7e-60 234.2 124 84.7
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 1.6e-57 226.5 112 90.2
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.8e-56 223.0 114 91.2
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 3.0e-56 222.2 119 83.2
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.4e-55 218.4 125 78.4
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 5.4e-53 211.5 171 55.6
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 6.5e-51 204.5 112 78.6
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 3.0e-48 195.7 104 84.6
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 7.5e-47 191.0 91 96.7
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 3.7e-46 188.7 142 67.6
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 1.6e-36 156.8 177 53.1
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 3.5e-36 155.6 88 79.5
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 7.5e-31 137.9 132 53.8
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 3.7e-30 135.6 114 62.3
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 3.5e-28 129.0 62 95.2
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 4.9e-22 108.6 115 47.8


User provided reference genes

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