Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 4.3e-26 120.6 60 100.0
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 8.9e-24 112.8 59 91.5
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 3.7e-22 107.5 59 89.8
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.4e-21 105.5 59 86.4
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 1.9e-21 105.1 59 84.7
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 2.4e-21 104.8 59 86.4
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 4.1e-21 104.0 59 84.7
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 5.4e-21 103.6 59 84.7
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 5.4e-21 103.6 60 85.0
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 7.0e-21 103.2 59 84.7
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 9.2e-21 102.8 59 83.1
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 9.2e-21 102.8 56 87.5
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.6e-20 102.1 57 84.2
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.6e-20 102.1 59 83.1
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 2.0e-20 101.7 59 79.7
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 2.7e-20 101.3 59 79.7
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 3.5e-20 100.9 56 85.7
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 4.6e-20 100.5 56 85.7
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.6e-20 100.5 56 85.7
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.6e-20 100.5 56 85.7
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.6e-20 100.5 56 85.7
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 4.6e-20 100.5 56 85.7
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 6.0e-20 100.1 59 81.4
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 7.8e-20 99.8 59 79.7
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 7.8e-20 99.8 56 83.9
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 7.8e-20 99.8 59 81.4
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 1.0e-19 99.4 58 81.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.3e-19 99.0 59 76.3
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 1.3e-19 99.0 56 82.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-19 99.0 56 83.9
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.3e-19 99.0 59 78.0
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.7e-19 98.6 59 83.1
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.3e-19 98.2 58 79.3
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 2.3e-19 98.2 59 79.7
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 5.0e-19 97.1 64 73.4
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.6e-19 96.7 59 76.3
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 6.6e-19 96.7 59 76.3
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 6.6e-19 96.7 56 80.4
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 6.6e-19 96.7 59 78.0
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 8.6e-19 96.3 59 76.3
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 8.6e-19 96.3 59 79.7
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 1.5e-18 95.5 59 74.6
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.5e-18 95.5 59 78.0
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.5e-18 95.5 59 78.0
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.5e-18 95.5 56 75.0
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 3.3e-18 94.4 59 72.9
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.3e-18 94.4 59 76.3
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 3.3e-18 94.4 56 76.8
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 5.6e-18 93.6 55 81.8
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 7.3e-18 93.2 56 80.4
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 9.5e-18 92.8 56 76.8
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 9.5e-18 92.8 56 75.0
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 1.2e-17 92.4 56 76.8
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 2.1e-17 91.7 59 74.6
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 2.1e-17 91.7 59 71.2
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.8e-17 91.3 56 78.6
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 3.6e-17 90.9 55 80.0
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.7e-17 90.5 59 67.8
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 4.7e-17 90.5 59 67.8
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 8.1e-17 89.7 56 73.2
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 1.1e-16 89.4 56 71.4
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.8e-16 88.6 59 72.9
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 1.8e-16 88.6 59 72.9
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 1.8e-16 88.6 59 72.9
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.8e-16 88.6 59 72.9
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 1.8e-16 88.6 56 71.4
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 1.8e-16 88.6 55 78.2
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.3e-16 88.2 59 72.9
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 3.1e-16 87.8 55 76.4
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.2e-15 85.9 59 67.8
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 1.2e-15 85.9 59 69.5
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 2.0e-15 85.1 56 75.0
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 3.4e-15 84.3 59 64.4
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 7.5e-15 83.2 83 54.2
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 9.8e-15 82.8 59 62.7
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.3e-14 82.4 92 52.2
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.3e-14 82.4 56 66.1
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.3e-14 82.4 56 67.9
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.7e-14 82.0 59 66.1
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 2.2e-14 81.6 55 69.1
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.7e-14 80.9 60 65.0
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 4.9e-14 80.5 60 65.0
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 4.9e-14 80.5 59 61.0
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 6.4e-14 80.1 59 69.5
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.3e-14 79.7 86 55.8
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.4e-13 79.0 42 88.1
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 3.2e-13 77.8 43 81.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.2e-12 75.9 46 76.1
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.1e-12 75.1 60 58.3
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 2.7e-12 74.7 42 85.7
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.0e-11 72.8 57 63.2
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.6e-11 69.7 41 80.5
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 3.3e-10 67.8 38 78.9
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.7e-09 63.9 56 58.9
TAR629G0285 Trochodendron aralioides HOM05D000186 ORTHO05D002091 8.4e-06 53.1 25 96.0


User provided reference genes

Program Settings