Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 6.8e-125 451.1 295 100.0
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 2.4e-74 283.1 303 56.1
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.8e-69 266.9 299 55.9
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-67 260.4 299 55.5
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 2.1e-65 253.4 220 63.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.7e-65 253.1 304 54.9
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 3.0e-64 249.6 303 50.2
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.0e-56 223.0 300 46.7
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 5.8e-52 208.8 298 46.3
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 6.5e-51 205.3 299 44.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 1.6e-49 200.7 289 43.9
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.5e-49 199.5 279 48.4
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.3e-48 196.8 299 43.5
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 6.7e-48 195.3 296 43.6
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.1e-47 194.5 297 45.1
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.1e-47 194.5 296 47.0
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 2.8e-46 189.9 302 42.7
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 8.2e-46 188.3 302 41.4
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.4e-45 186.8 302 42.1
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.0e-45 184.9 302 41.4
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.5e-44 182.6 288 40.3
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.2e-43 180.3 288 40.3
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.1e-42 177.9 272 43.4
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 9.4e-42 174.9 303 40.6
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.3e-40 170.2 326 37.7
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.5e-39 167.5 298 37.6
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.7e-38 164.1 296 37.8
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.4e-37 160.2 290 40.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 5.3e-37 159.1 293 40.3
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.5e-36 157.5 305 42.6
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.0e-36 157.1 293 36.5
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.9e-36 155.6 287 36.2
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 5.9e-36 155.6 287 36.9
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.0e-35 154.8 304 39.5
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.0e-35 154.8 292 38.0
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.7e-35 154.1 296 39.5
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.7e-35 154.1 291 40.2
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.5e-35 152.1 287 36.6
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.4e-34 151.0 289 38.4
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 1.4e-34 151.0 298 36.9
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.9e-34 150.6 290 37.2
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.2e-34 149.8 291 37.5
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.2e-34 149.8 289 38.4
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.5e-34 149.1 300 35.3
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 9.4e-34 148.3 295 35.9
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 4.7e-33 146.0 290 37.2
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.9e-33 145.2 287 35.9
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 1.0e-32 144.8 288 39.2
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 8.8e-32 141.7 288 36.1
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 8.8e-32 141.7 288 36.1
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.1e-31 141.4 294 34.0
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.5e-31 141.0 289 33.9
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 3.3e-31 139.8 294 35.7
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 3.3e-31 139.8 294 34.0
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 7.4e-31 138.7 141 56.0
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 2.2e-30 137.1 292 38.4
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 3.1e-29 133.3 298 37.2
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 5.3e-29 132.5 312 34.9
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 9.1e-29 131.7 296 33.8
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 4.5e-28 129.4 314 36.0
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 5.9e-28 129.0 295 33.9
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 5.9e-28 129.0 286 33.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 7.7e-28 128.6 288 34.7
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.0e-27 128.3 203 42.4
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.0e-27 128.3 353 32.9
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 1.0e-27 128.3 208 38.9
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.7e-27 127.5 289 34.6
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 3.8e-27 126.3 199 41.7
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 5.0e-27 125.9 295 33.2
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 8.5e-27 125.2 287 33.4
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.1e-26 124.8 175 45.1
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.9e-26 124.0 290 40.3
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.9e-26 124.0 286 35.0
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 2.5e-26 123.6 287 34.1
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.5e-26 123.6 353 32.0
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 7.2e-26 122.1 196 40.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 3.6e-25 119.8 290 32.8
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.6e-25 119.8 293 33.1
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.3e-24 117.1 291 34.0
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 6.7e-24 115.5 297 34.0
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 8.8e-24 115.2 295 33.6
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 8.8e-24 115.2 291 34.0
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.5e-23 114.4 297 34.0
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 2.6e-23 113.6 289 33.6
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 4.4e-23 112.8 297 33.7
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 4.4e-23 112.8 305 34.1
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 9.7e-23 111.7 292 33.6
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 9.7e-23 111.7 297 33.7
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-22 110.9 292 33.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.7e-22 110.9 292 33.9
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.7e-22 109.8 294 30.3
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 3.7e-22 109.8 293 32.1
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 6.3e-22 109.0 345 30.1
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 8.2e-22 108.6 292 32.2
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.4e-21 107.8 291 31.6
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.8e-21 107.5 293 30.7
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.4e-21 107.1 292 30.1
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 3.1e-21 106.7 296 34.5
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.1e-21 106.7 292 30.1
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 4.1e-21 106.3 291 32.6
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.1e-21 106.3 304 30.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.3e-21 105.9 292 33.6
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.3e-21 105.9 292 33.6
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 9.1e-21 105.1 135 45.2
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.2e-20 104.8 288 31.2
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.5e-20 103.2 296 30.4
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 3.5e-20 103.2 292 31.5
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 5.9e-20 102.4 303 29.0
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 7.7e-20 102.1 292 32.9
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.0e-19 101.7 314 28.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.0e-19 101.7 138 42.8
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.7e-19 100.9 292 32.2
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.2e-19 100.5 152 40.8
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 6.5e-19 99.0 301 31.6
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.1e-18 98.2 289 32.5
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.1e-18 98.2 187 34.2
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.9e-18 97.4 294 29.9
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 1.9e-18 97.4 294 29.9
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 3.2e-18 96.7 196 38.3
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 3.2e-18 96.7 191 38.2
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 4.2e-18 96.3 181 37.0
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 5.5e-18 95.9 151 40.4
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 5.5e-18 95.9 311 31.5
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 7.2e-18 95.5 292 29.8
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 1.2e-17 94.7 175 38.9
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.6e-17 94.4 289 29.8
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.1e-17 94.0 306 29.4
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 4.7e-17 92.8 143 42.7
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.0e-16 91.7 195 32.3
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.0e-16 91.7 290 30.7
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 2.3e-16 90.5 295 28.1
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.3e-16 90.5 295 31.2
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.0e-16 89.7 196 33.2
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 5.2e-16 89.4 297 42.8
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.2e-16 89.4 130 43.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 8.8e-16 88.6 305 27.2
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.2e-15 88.2 135 37.8
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.2e-15 88.2 153 39.9
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.5e-15 87.8 197 35.0
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 2.0e-15 87.4 137 38.7
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 2.0e-15 87.4 197 34.0
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.6e-15 87.0 153 39.2
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.7e-15 85.1 151 38.4
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.3e-14 84.7 177 35.6
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.3e-14 84.7 156 39.7
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.7e-14 84.3 291 28.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.7e-14 84.3 130 40.8
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.8e-14 83.6 283 28.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 3.7e-14 83.2 136 39.0
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 6.3e-14 82.4 285 29.8
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.1e-13 81.6 131 38.2
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.4e-13 81.3 297 27.9
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.1e-13 79.7 144 41.7
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.1e-13 79.7 144 41.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 5.3e-13 79.3 143 35.0
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 5.3e-13 79.3 290 28.6
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 5.3e-13 79.3 132 40.2
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.6e-12 77.8 306 27.5
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.5e-12 76.6 284 28.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 5.9e-12 75.9 302 28.5
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 7.7e-12 75.5 140 37.1
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.0e-11 75.1 289 27.3
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.2e-11 73.9 299 26.8
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.2e-11 73.9 330 28.5
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 6.5e-11 72.4 263 29.7
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 8.5e-11 72.0 299 26.4
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 1.5e-10 71.2 135 34.1
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.5e-10 71.2 306 26.1
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.9e-10 70.9 284 29.2
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 2.5e-10 70.5 290 26.6
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.5e-10 70.5 295 30.5
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 4.2e-10 69.7 296 26.4
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.2e-09 68.2 299 26.4
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.2e-09 68.2 297 26.9
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.6e-09 67.8 287 27.5
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 2.7e-09 67.0 272 27.2
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.0e-08 65.1 135 34.8
COL.COLO4_18713 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.0e-08 65.1 56 55.4
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.4e-08 64.7 276 30.4
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.0e-08 63.5 134 35.1
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 5.2e-08 62.8 136 34.6
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 6.8e-08 62.4 134 34.3
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 6.8e-08 62.4 135 36.3
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 1.5e-07 61.2 69 50.7
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.7e-07 59.3 289 26.0
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.3e-06 58.2 286 27.3


User provided reference genes

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