Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 0.0e+00 2124.4 1070 100.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1265.0 850 78.8
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 0.0e+00 1243.8 876 75.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 0.0e+00 1146.3 902 70.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 0.0e+00 1084.7 855 68.3
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.6e-299 1032.3 854 66.5
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 2.2e-298 1029.2 856 65.8
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 9.8e-291 1003.8 908 62.3
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 6.4e-290 1001.1 844 64.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 5.6e-286 988.0 844 63.4
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 4.7e-285 984.9 881 60.5
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 6.4e-282 974.5 848 62.7
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.7e-280 969.1 851 62.4
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 3.6e-277 958.7 852 62.3
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.2e-277 958.0 695 72.9
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 6.8e-276 954.5 734 68.5
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.9e-276 954.1 863 59.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-274 950.3 844 61.8
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.7e-274 949.9 858 62.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.9e-273 946.4 850 61.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.0e-271 940.6 857 61.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.7e-271 939.9 847 61.7
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.7e-271 939.9 855 60.6
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-269 933.7 853 61.1
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 4.7e-269 931.8 860 60.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.1e-269 931.0 817 62.5
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 1.2e-267 927.2 843 61.6
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.0e-267 926.4 818 62.5
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.0e-267 926.4 818 62.1
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.4e-267 925.2 851 62.3
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 4.4e-267 925.2 845 59.8
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 5.8e-267 924.9 885 58.2
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 7.6e-267 924.5 818 61.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 2.4e-265 919.5 850 59.8
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 3.2e-265 919.1 849 60.2
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 3.2e-265 919.1 754 65.8
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 9.3e-265 917.5 846 60.0
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.6e-264 916.8 827 61.4
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.5e-262 910.2 861 59.3
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.3e-262 909.1 859 59.6
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 9.6e-262 907.5 881 57.3
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.1e-261 906.4 856 59.9
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.8e-261 906.0 852 59.0
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 6.9e-260 901.4 853 58.9
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 4.4e-259 898.7 854 58.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 6.4e-258 894.8 848 59.3
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.1e-254 884.0 910 57.5
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 2.5e-254 882.9 870 57.1
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.3e-253 880.6 819 59.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.8e-253 879.4 855 58.5
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 8.1e-253 877.9 844 58.8
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.1e-252 877.5 852 57.6
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.4e-252 877.1 846 58.3
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 5.3e-252 875.2 843 57.7
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 4.5e-251 872.1 819 58.6
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 7.6e-251 871.3 863 58.1
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 4.9e-250 868.6 858 55.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 5.4e-249 865.1 860 57.2
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 7.1e-249 864.8 769 61.2
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 9.3e-249 864.4 852 58.1
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 9.3e-249 864.4 856 56.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.3e-249 864.4 817 58.0
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.7e-248 862.8 852 56.6
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.6e-248 862.1 855 56.5
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.3e-247 859.8 935 54.1
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 9.6e-246 854.4 865 57.2
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.3e-245 854.0 851 56.9
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.7e-245 852.4 862 56.7
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.1e-244 850.9 870 56.3
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 3.1e-244 849.4 863 56.2
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 6.5e-242 841.6 862 56.3
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.4e-241 840.5 821 57.1
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.2e-240 837.4 850 56.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.2e-240 837.4 880 55.3
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.1e-236 822.8 1015 49.8
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 3.1e-236 822.8 865 55.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.3e-236 822.0 854 55.6
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.2e-234 816.6 859 55.1
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 5.0e-234 815.5 858 55.2
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 5.5e-233 812.0 854 54.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 7.2e-233 811.6 720 63.5
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 2.7e-232 809.7 832 56.2
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.5e-232 809.3 849 55.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.9e-231 805.8 854 54.3
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 4.8e-229 798.9 849 53.9
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.8e-228 797.0 859 54.5
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.1e-228 796.2 872 53.6
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 3.9e-223 779.2 896 51.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.3e-222 776.2 706 59.3
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.4e-220 770.0 784 55.9
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.2e-219 767.7 859 53.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.7e-218 763.8 772 57.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-217 761.1 772 55.7
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.6e-216 757.3 857 53.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-216 756.9 848 53.2
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 3.6e-216 756.1 857 53.0
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 3.6e-216 756.1 857 53.0
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 4.7e-216 755.7 855 52.9
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 6.1e-216 755.4 849 53.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.0e-215 754.6 855 52.9
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 6.3e-213 745.3 852 53.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.2e-213 745.0 763 55.7
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 7.0e-212 741.9 857 52.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 4.5e-211 739.2 862 50.2
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 7.2e-209 731.9 827 52.7
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 4.0e-207 726.1 762 55.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-206 724.2 851 52.1
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.3e-205 721.1 728 56.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.2e-205 720.3 866 49.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 3.1e-204 716.5 856 50.1
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.0e-198 697.2 814 51.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 5.7e-198 695.7 773 52.4
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 9.8e-198 694.9 590 62.7
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.0e-191 674.9 853 50.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 6.8e-191 672.2 722 55.1
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 3.1e-188 663.3 874 49.2
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.3e-186 657.9 529 64.8
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.3e-181 641.3 857 46.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 9.5e-177 625.2 854 45.9
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 3.6e-176 623.2 891 44.3
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-169 601.7 840 44.4
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.2e-165 587.4 525 60.6
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 7.3e-161 572.4 598 55.0
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 3.1e-159 567.0 800 45.4
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 8.9e-159 565.5 1010 39.5
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 2.9e-157 560.5 862 45.4
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.2e-155 555.1 772 42.9
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.7e-149 534.6 508 58.3
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.4e-148 530.8 813 43.8
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.0e-146 523.9 430 65.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.3e-145 520.4 750 44.5
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 7.1e-132 476.1 601 50.4
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.6e-120 438.3 841 37.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.0e-109 402.5 370 61.9
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 3.6e-107 394.0 514 46.5
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 7.9e-99 366.3 742 36.0
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.7e-96 358.6 648 35.6
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.6e-94 351.3 792 33.6
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 9.4e-92 342.8 437 49.4
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.2e-86 325.9 321 55.5
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.4e-79 300.4 259 64.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.9e-62 243.8 252 54.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.6e-46 191.0 263 46.8
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.4e-39 168.7 171 56.1
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 3.5e-38 164.9 400 36.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-35 156.0 400 36.0
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.6e-35 156.0 400 36.0
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.6e-35 156.0 136 62.5
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 5.4e-31 141.0 129 57.4
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 6.2e-27 127.5 184 46.2
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-26 125.9 248 40.3
CSS0016848 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-26 125.6 118 46.6
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 4.2e-23 114.8 134 50.7
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 5.1e-21 107.8 342 27.8
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-20 106.7 166 39.2
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 7.4e-20 104.0 177 39.5
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 9.6e-20 103.6 178 41.0
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 6.9e-18 97.4 105 54.3
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 4.9e-16 91.3 266 33.5
Rhsim03G0069200 Rhododendron simsii HOM05D000046 ORTHO05D001818 8.4e-16 90.5 79 62.0
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 1.1e-15 90.1 94 52.1
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 5.5e-15 87.8 60 73.3
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.8e-13 82.8 172 36.6
CSS0022381 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 7.4e-12 77.4 72 47.2
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.3e-11 76.6 63 58.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 2.1e-11 75.9 66 56.1
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.1e-11 75.9 126 42.1
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 8.2e-11 73.9 80 55.0
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 3.1e-10 72.0 85 54.1
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.0e-08 67.0 59 50.8
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.3e-08 66.6 79 48.1
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 2.2e-08 65.9 38 81.6
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 4.9e-08 64.7 35 88.6
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 6.5e-08 64.3 243 23.5
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-07 62.0 57 52.6
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 7.1e-07 60.8 99 41.4
CSS0029142 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D006165 4.6e-06 58.2 25 96.0


User provided reference genes

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