Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048320 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.4e-117 426.4 213 100.0
CSS0026794 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 5.4e-69 265.0 224 65.2
CSS0025868 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 4.0e-64 248.8 128 96.1
CSS0003429 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 8.9e-64 247.7 203 67.0
CSS0039249 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 3.2e-61 239.2 190 67.9
CSS0020150 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.8e-56 223.4 136 81.6
CSS0020566 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 1.5e-42 177.2 221 51.6
vmacro23014 Vaccinium macrocarpon HOM05D011412 ORTHO05D009969 6.7e-27 125.2 209 42.1
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 5.3e-24 115.5 156 43.6
Dinv40186 Davidia involucrata HOM05D009853 ORTHO05D009969 2.6e-23 113.2 171 39.8
Rhsim08G0215000 Rhododendron simsii HOM05D011412 ORTHO05D009969 6.4e-22 108.6 171 42.1
Rhsim08G0027100 Rhododendron simsii HOM05D011412 ORTHO05D009969 1.1e-21 107.8 144 41.7
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 6.0e-20 102.1 192 35.4
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 4.3e-18 95.9 139 41.0
Dinv38023 Davidia involucrata HOM05D011412 ORTHO05D009969 9.6e-18 94.7 175 36.6
Rhsim07G0189200 Rhododendron simsii HOM05D009853 ORTHO05D009969 1.5e-15 87.4 145 37.9
Solyc05g013370.1 Solanum lycopersicum HOM05D013339 ORTHO05D009969 1.5e-15 87.4 151 35.8
Sopen05g008160 Solanum pennellii HOM05D013339 ORTHO05D009969 4.5e-15 85.9 144 36.1
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 1.0e-14 84.7 148 38.5
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 2.2e-14 83.6 126 35.7
PGSC0003DMG400007682 Solanum tuberosum HOM05D013339 ORTHO05D009969 5.5e-13 79.0 136 38.2
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 2.7e-12 76.6 65 52.3
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 3.9e-11 72.8 157 35.0
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 4.3e-10 69.3 136 32.4
Oeu031750.4 Olea europaea HOM05D041624 ORTHO05D009969 5.7e-10 68.9 175 28.0
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 9.7e-10 68.2 153 31.4
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-09 67.8 156 30.8
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 1.3e-09 67.8 171 28.7
Dinv42114 Davidia involucrata HOM05D011412 ORTHO05D009969 1.3e-09 67.8 117 35.0
Oeu029234.1 Olea europaea HOM05D011412 ORTHO05D009969 1.3e-09 67.8 136 30.1
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.6e-09 67.4 207 29.0
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.6e-09 67.4 156 30.8
RcHm_v2.0_Chr2g0175531 Rosa chinensis HOM05D000307 ORTHO05D000166 2.2e-09 67.0 138 34.8
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.8e-09 66.6 153 30.7
Nitab4.5_0000365g0070 Nicotiana tabacum HOM05D000307 ORTHO05D000166 2.8e-09 66.6 155 31.6
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.7e-09 66.2 153 30.7
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 3.7e-09 66.2 153 30.7
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.8e-09 65.9 146 31.5
RcHm_v2.0_Chr5g0016461 Rosa chinensis HOM05D000307 ORTHO05D000166 4.8e-09 65.9 138 33.3
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.8e-09 65.9 165 30.9
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 6.3e-09 65.5 145 33.1
Eucgr.K02595 Eucalyptus grandis HOM05D000307 ORTHO05D000166 1.1e-08 64.7 148 30.4
Nitab4.5_0003774g0010 Nicotiana tabacum HOM05D038292 ORTHO05D009969 1.4e-08 64.3 128 32.8
Actinidia01758 Actinidia chinensis HOM05D013339 ORTHO05D009969 2.4e-08 63.5 106 39.6
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.1e-08 62.8 156 29.5
Nitab4.5_0000167g0220 Nicotiana tabacum HOM05D000307 ORTHO05D000166 4.1e-08 62.8 155 31.0
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.3e-08 62.4 149 28.2
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 5.3e-08 62.4 139 31.7
CSS0029060 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 6.9e-08 62.0 174 28.2
TAR624G0600 Trochodendron aralioides HOM05D000307 ORTHO05D000166 6.9e-08 62.0 182 26.9
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 9.0e-08 61.6 159 30.8
FvH4_6g53490 Fragaria vesca HOM05D000307 ORTHO05D000166 9.0e-08 61.6 146 30.8
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 9.0e-08 61.6 173 28.3
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-07 61.2 160 28.1
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 1.2e-07 61.2 148 31.8
Gohir.D11G185000 Gossypium hirsutum HOM05D000307 ORTHO05D000166 1.2e-07 61.2 156 30.1
Gorai.007G196600 Gossypium raimondii HOM05D000307 ORTHO05D000166 1.2e-07 61.2 156 30.1
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.2e-07 61.2 189 30.2
Sopen11g010690 Solanum pennellii HOM05D000307 ORTHO05D000166 1.2e-07 61.2 153 28.8
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.5e-07 60.8 148 31.8
Lsat_1_v5_gn_5_103840 Lactuca sativa HOM05D000307 ORTHO05D000166 1.5e-07 60.8 166 31.9
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.0e-07 60.5 130 31.5
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.0e-07 60.5 175 26.3
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.6e-07 60.1 164 26.8
ClCG05G012100 Citrullus lanatus HOM05D000307 ORTHO05D000166 2.6e-07 60.1 189 25.9
FAN02G3985 Fragaria x ananassa HOM05D000307 ORTHO05D000166 2.6e-07 60.1 148 30.4
FAN05G4713 Fragaria x ananassa HOM05D000307 ORTHO05D000166 3.4e-07 59.7 203 26.1
Gohir.A11G177200 Gossypium hirsutum HOM05D000307 ORTHO05D000166 3.4e-07 59.7 156 30.8
Lj5g0004947 Lotus japonicus HOM05D000307 ORTHO05D000166 3.4e-07 59.7 150 29.3
Lj5g0023944 Lotus japonicus HOM05D000307 ORTHO05D000166 3.4e-07 59.7 150 29.3
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.4e-07 59.7 149 29.5
Dinv15101 Davidia involucrata HOM05D000307 ORTHO05D000166 4.5e-07 59.3 172 30.8
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 4.5e-07 59.3 165 29.7
Manes.15G161100 Manihot esculenta HOM05D028904 ORTHO05D000166 4.5e-07 59.3 151 30.5
TWI34G1561 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 4.5e-07 59.3 152 28.9
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 5.9e-07 58.9 146 28.8
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 5.9e-07 58.9 150 31.3
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 5.9e-07 58.9 173 27.2
CSS0047056 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.7e-07 58.5 176 27.8
Cpa.g.sc25.11 Carica papaya HOM05D063200 ORTHO05D009969 7.7e-07 58.5 147 27.9
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.7e-07 58.5 146 28.8
FAN09G4481 Fragaria x ananassa HOM05D000307 ORTHO05D000166 7.7e-07 58.5 200 26.0
Lsat_1_v5_gn_9_60601 Lactuca sativa HOM05D000307 ORTHO05D000166 7.7e-07 58.5 160 30.6
PGSC0003DMG400026881 Solanum tuberosum HOM05D009853 ORTHO05D009969 7.7e-07 58.5 157 31.2
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.0e-06 58.2 200 26.0
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.0e-06 58.2 157 28.0
Sopen01g046240 Solanum pennellii HOM05D000600 ORTHO05D000432 1.0e-06 58.2 90 34.4
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 1.3e-06 57.8 149 28.2
CSS0036006 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-06 57.8 148 30.4
Lsat_1_v5_gn_0_21801 Lactuca sativa HOM05D000307 ORTHO05D000166 1.3e-06 57.8 146 28.8
Potri.001G329800 Populus trichocarpa HOM05D056674 ORTHO05D000166 1.3e-06 57.8 233 27.9
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 1.7e-06 57.4 148 29.1
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 1.7e-06 57.4 54 44.4
Solyc11g020320.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 1.7e-06 57.4 145 26.2
Thecc.01G021900 Theobroma cacao HOM05D000307 ORTHO05D000166 1.7e-06 57.4 158 31.0
CANSAT25G2697 Cannabis sativa HOM05D000307 ORTHO05D000166 2.2e-06 57.0 106 36.8
Cpa.g.sc25.27 Carica papaya HOM05D063200 ORTHO05D009969 2.2e-06 57.0 147 27.9
Nitab4.5_0029272g0020 Nicotiana tabacum HOM05D009853 ORTHO05D009969 2.2e-06 57.0 137 30.7
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 2.2e-06 57.0 163 28.8
TAR625G0022 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.2e-06 57.0 155 25.8
Lj1C1007T18 Lonicera japonica HOM05D000307 ORTHO05D000166 2.9e-06 56.6 151 29.8
Rhsim04G0216100 Rhododendron simsii HOM05D011412 ORTHO05D009969 2.9e-06 56.6 122 29.5
PGSC0003DMG400026582 Solanum tuberosum HOM05D009853 ORTHO05D009969 2.9e-06 56.6 127 29.1
THA.LOC104826652 Tarenaya hassleriana HOM05D000307 ORTHO05D000166 2.9e-06 56.6 169 26.6
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.8e-06 56.2 58 43.1
Eucgr.J02241 Eucalyptus grandis HOM05D000307 ORTHO05D000166 3.8e-06 56.2 150 27.3
FAN20G0315 Fragaria x ananassa HOM05D000307 ORTHO05D000166 3.8e-06 56.2 223 26.0
Nitab4.5_0000948g0200 Nicotiana tabacum HOM05D009853 ORTHO05D009969 3.8e-06 56.2 64 43.8
THA.LOC104817774 Tarenaya hassleriana HOM05D000307 ORTHO05D000166 3.8e-06 56.2 164 28.7
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 5.0e-06 55.8 129 31.8
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 5.0e-06 55.8 129 31.8
PGSC0003DMG400033092 Solanum tuberosum HOM05D009853 ORTHO05D009969 5.0e-06 55.8 68 39.7
TAR625G0088 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.0e-06 55.8 163 27.0
TAR625G0813 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.0e-06 55.8 163 27.0
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 6.5e-06 55.5 143 24.5
CANSAT25G1728 Cannabis sativa HOM05D000307 ORTHO05D000166 6.5e-06 55.5 83 38.6
Cc09_g03630 Coffea canephora HOM05D000307 ORTHO05D000166 6.5e-06 55.5 71 42.3
Hma1.2p1_0038F.1_g024040 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 6.5e-06 55.5 148 31.8
Nn6g34316 Nelumbo nucifera HOM05D000042 ORTHO05D000028 6.5e-06 55.5 136 29.4
Oeu014492.1 Olea europaea HOM05D011412 ORTHO05D009969 6.5e-06 55.5 121 26.4
Oeu048608.1 Olea europaea HOM05D041624 ORTHO05D009969 6.5e-06 55.5 183 24.0
Solyc01g103870.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 6.5e-06 55.5 90 33.3
SGA_v2.0_scaffold304G47921 Striga asiatica HOM05D000307 ORTHO05D000166 6.5e-06 55.5 71 35.2
TAR625G1049 Trochodendron aralioides HOM05D000307 ORTHO05D000166 6.5e-06 55.5 163 27.6
Aqoxy7G02773 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 8.5e-06 55.1 154 24.7
CANSAT25G3387 Cannabis sativa HOM05D000307 ORTHO05D000166 8.5e-06 55.1 83 38.6
CANSAT78G0540 Cannabis sativa HOM05D000307 ORTHO05D000166 8.5e-06 55.1 155 30.3
CANSAT78G1380 Cannabis sativa HOM05D000307 ORTHO05D000166 8.5e-06 55.1 155 30.3
COL.COLO4_22397 Corchorus olitorius HOM05D000307 ORTHO05D000166 8.5e-06 55.1 149 30.2
ECA247G2879 Erigeron canadensis HOM05D000307 ORTHO05D008008 8.5e-06 55.1 136 33.1
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 8.5e-06 55.1 148 30.4
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 8.5e-06 55.1 148 30.4
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 8.5e-06 55.1 148 30.4
Oeu048605.1 Olea europaea HOM05D041624 ORTHO05D009969 8.5e-06 55.1 182 23.1
Sopen01g046270 Solanum pennellii HOM05D000600 ORTHO05D000432 8.5e-06 55.1 87 34.5
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.5e-06 55.1 124 29.0


User provided reference genes

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