Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.0e-125 452.6 252 100.0
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 6.4e-92 341.3 247 72.1
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.4e-91 340.1 247 72.5
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.5e-88 330.1 240 71.7
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 9.6e-88 327.4 244 70.9
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 3.7e-87 325.5 245 80.0
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 1.0e-84 317.4 242 67.8
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 8.4e-84 314.3 239 66.5
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.1e-83 313.9 243 65.8
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 1.4e-83 313.5 243 70.4
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.9e-83 313.2 244 67.2
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 2.5e-83 312.8 245 70.2
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 2.5e-83 312.8 249 64.7
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 3.2e-83 312.4 243 66.7
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 1.6e-82 310.1 232 67.7
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.7e-82 309.3 251 64.1
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 3.5e-82 308.9 251 64.1
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 4.6e-82 308.5 243 68.3
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 4.6e-82 308.5 246 64.2
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 1.3e-81 307.0 235 72.3
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 1.3e-81 307.0 246 67.1
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.8e-81 306.6 245 69.4
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.8e-81 306.6 243 65.8
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 3.0e-81 305.8 248 65.7
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 3.9e-81 305.4 243 69.1
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 5.1e-81 305.1 254 63.8
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 6.7e-81 304.7 243 67.5
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 6.7e-81 304.7 249 64.3
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 8.7e-81 304.3 234 70.5
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 3.3e-80 302.4 227 68.3
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 4.3e-80 302.0 238 64.7
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 5.7e-80 301.6 250 66.8
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 7.4e-80 301.2 249 63.1
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 7.4e-80 301.2 234 64.5
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 9.7e-80 300.8 247 63.2
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.3e-79 300.4 248 67.7
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 1.3e-79 300.4 227 69.6
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 1.6e-79 300.1 248 63.3
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 2.2e-79 299.7 287 57.5
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 2.8e-79 299.3 247 62.8
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 6.3e-79 298.1 246 65.4
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 8.2e-79 297.7 247 62.8
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 1.4e-78 297.0 240 66.7
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.4e-78 297.0 244 61.1
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.4e-78 296.2 237 63.7
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 3.1e-78 295.8 247 61.9
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 4.1e-78 295.4 245 62.4
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 5.3e-78 295.0 245 62.4
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 5.3e-78 295.0 237 62.0
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 5.3e-78 295.0 230 66.5
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 6.9e-78 294.7 227 66.1
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 2.0e-77 293.1 227 64.3
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 2.0e-77 293.1 244 62.3
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 3.4e-77 292.4 245 62.0
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 4.5e-77 292.0 241 66.4
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.5e-77 292.0 253 61.7
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 5.9e-77 291.6 243 61.7
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 5.9e-77 291.6 227 63.9
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.9e-77 291.6 245 63.7
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 5.9e-77 291.6 247 62.3
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 7.7e-77 291.2 244 61.9
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 1.0e-76 290.8 235 64.3
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.3e-76 290.4 245 61.6
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 2.2e-76 289.7 247 62.8
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.9e-76 289.3 245 61.6
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 2.9e-76 289.3 236 63.1
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 2.9e-76 289.3 240 61.7
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 5.0e-76 288.5 243 60.5
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 1.4e-75 287.0 265 64.9
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 5.5e-75 285.0 242 62.8
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 7.2e-75 284.6 247 58.7
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 1.6e-74 283.5 235 60.9
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 6.7e-73 278.1 231 64.1
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.5e-72 276.9 237 60.3
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 2.0e-72 276.6 251 58.2
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 3.3e-72 275.8 235 61.3
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 4.3e-72 275.4 248 61.7
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 5.7e-72 275.0 242 60.7
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 5.7e-72 275.0 215 64.7
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 4.8e-71 271.9 235 60.9
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 1.4e-70 270.4 244 59.0
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 3.1e-70 269.2 235 60.4
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 1.5e-69 266.9 244 67.6
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.3e-68 263.8 271 55.7
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 1.3e-68 263.8 268 54.5
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 1.1e-67 260.8 239 56.9
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 9.4e-67 257.7 246 56.5
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.6e-66 256.9 272 55.1
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 1.8e-65 253.4 229 59.8
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 8.8e-65 251.1 260 58.5
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.3e-64 249.2 243 56.8
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 4.4e-64 248.8 242 57.0
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 8.2e-63 244.6 242 56.2
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.8e-62 243.4 280 51.8
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 6.5e-60 235.0 244 54.1
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 7.2e-59 231.5 187 65.8
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 6.1e-58 228.4 205 61.5
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.0e-57 226.1 154 79.2
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 6.7e-57 224.9 173 61.8
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 3.3e-56 222.6 247 50.2
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.3e-55 220.7 154 89.6
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 2.8e-55 219.5 142 75.4
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 7.0e-54 214.9 139 77.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 3.5e-53 212.6 178 66.3
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 3.8e-52 209.1 158 63.3
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.5e-51 206.5 141 68.8
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 2.2e-44 183.3 167 60.5
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 1.7e-39 167.2 244 46.3
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 1.4e-38 164.1 158 61.4
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 1.8e-38 163.7 216 46.8
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 7.0e-38 161.8 241 41.5
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 3.3e-35 152.9 157 53.5
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.1e-34 150.2 168 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.1e-30 137.9 179 40.8
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.1e-30 137.9 255 32.2
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 1.8e-30 137.1 252 35.3
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 9.2e-30 134.8 89 68.5
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 5.2e-25 119.0 154 42.9
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 2.0e-24 117.1 71 76.1
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.5e-16 90.9 116 50.0
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 5.8e-16 89.0 131 45.0
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 6.4e-15 85.5 79 54.4
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 6.4e-15 85.5 107 50.5
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 8.3e-15 85.1 46 84.8
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 3.9e-12 76.3 90 52.2
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 3.9e-12 76.3 46 78.3
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 5.6e-11 72.4 175 34.3
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 2.1e-10 70.5 111 41.4
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 4.9e-07 59.3 39 76.9
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 1.1e-06 58.2 90 42.2


User provided reference genes

Program Settings