Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 3.1e-179 632.9 718 100.0
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 5.3e-91 339.7 262 98.5
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 1.3e-89 335.1 469 81.7
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 2.3e-86 324.3 484 75.8
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 5.2e-86 323.2 592 76.7
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 3.2e-67 260.8 458 74.0
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 1.5e-64 251.9 453 70.6
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 1.6e-58 231.9 483 70.2
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.5e-56 225.3 461 62.9
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 1.2e-53 215.7 456 68.6
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 7.5e-53 213.0 579 71.7
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 9.9e-53 212.6 453 50.6
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 2.2e-52 211.5 448 70.5
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 1.4e-51 208.8 448 70.5
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 8.6e-49 199.5 460 68.5
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 5.6e-48 196.8 429 68.1
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 2.6e-45 188.0 438 73.1
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.4e-45 187.6 439 70.6
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 4.4e-45 187.2 452 66.6
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 9.9e-45 186.0 589 69.9
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 2.2e-44 184.9 576 71.7
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 1.4e-43 182.2 483 63.8
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 7.1e-43 179.9 464 66.6
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-42 179.1 262 56.9
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 2.7e-42 177.9 262 56.9
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 4.6e-42 177.2 262 53.8
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 4.6e-42 177.2 262 56.1
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.0e-41 176.0 262 55.0
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-41 175.6 262 54.2
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 1.7e-41 175.3 262 57.6
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 1.7e-41 175.3 262 56.9
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.1e-40 172.6 432 71.3
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-40 172.6 262 55.7
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-40 172.6 262 64.1
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 7.3e-40 169.9 140 62.1
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 4.7e-39 167.2 264 61.0
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 3.1e-38 164.5 264 50.4
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 6.9e-38 163.3 442 65.8
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 2.6e-37 161.4 426 71.6
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 4.4e-37 160.6 463 65.2
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 1.3e-36 159.1 452 68.8
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.2e-36 158.3 457 64.1
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 3.2e-35 154.5 608 54.3
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.5e-34 151.0 610 50.3
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 4.6e-34 150.6 485 53.0
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 6.0e-34 150.2 454 68.7
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 5.1e-33 147.1 455 43.7
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 1.1e-32 146.0 438 66.4
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 1.5e-32 145.6 586 65.7
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 2.5e-32 144.8 427 70.3
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 5.6e-32 143.7 474 55.1
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 1.4e-30 139.0 609 49.6
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 2.4e-30 138.3 134 47.8
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 1.2e-29 136.0 460 62.8
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 7.6e-29 133.3 486 51.0
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 1.3e-28 132.5 485 56.5
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 3.8e-28 131.0 485 51.8
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 3.8e-28 131.0 485 51.8
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 6.4e-28 130.2 485 56.5
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 6.4e-28 130.2 485 56.3
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 3.5e-26 124.4 428 68.7
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 3.5e-26 124.4 428 68.7
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.0e-25 122.9 136 48.5
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.8e-25 122.1 403 69.2
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 8.7e-25 119.8 424 68.4
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 1.9e-24 118.6 580 27.1
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 1.4e-22 112.5 115 54.8
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 6.9e-22 110.2 264 39.8
CSS0005035 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 9.0e-22 109.8 153 98.7
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 9.0e-22 109.8 262 59.9
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 2.6e-21 108.2 114 54.4
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 4.5e-21 107.5 122 49.2
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 9.9e-21 106.3 142 38.7
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 1.7e-20 105.5 409 65.8
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 8.7e-17 93.2 120 41.7
Nitab4.5_0005512g0030 Nicotiana tabacum HOM05D000508 ORTHO05D000371 3.3e-16 91.3 62 64.5
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 1.1e-14 86.3 96 53.1
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 2.4e-14 85.1 117 39.3
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 1.2e-10 72.8 80 46.2
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 3.5e-10 71.2 109 42.2
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 3.0e-09 68.2 108 41.7
Psat2g188440 Pisum sativum HOM05D000424 ORTHO05D000355 6.9e-06 57.0 79 32.9
Atru.chr1.698 Acer truncatum HOM05D034768 ORTHO05D009747 9.0e-06 56.6 36 72.2
CAN.G508.18 Capsicum annuum HOM05D000002 ORTHO05D000001 9.0e-06 56.6 42 59.5


User provided reference genes

Program Settings