Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 2.2e-29 131.7 70 100.0
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 5.0e-26 120.6 69 92.8
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 1.7e-18 95.5 67 71.6
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 2.2e-18 95.1 67 73.1
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.2e-18 95.1 67 73.1
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.2e-18 95.1 67 74.6
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 3.8e-18 94.4 67 71.6
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 6.5e-18 93.6 67 71.6
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-17 92.8 66 71.2
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.1e-17 92.8 67 73.1
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 1.4e-17 92.4 67 65.7
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 1.9e-17 92.0 67 68.7
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 3.2e-17 91.3 67 68.7
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 4.2e-17 90.9 67 67.2
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 1.6e-16 89.0 58 72.4
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 2.1e-16 88.6 67 65.7
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.1e-16 87.0 67 65.7
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 6.1e-16 87.0 67 64.2
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 8.0e-16 86.7 67 64.2
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.4e-15 85.9 58 70.7
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 1.8e-15 85.5 67 64.2
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 2.3e-15 85.1 67 64.2
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 2.3e-15 85.1 67 59.7
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 3.0e-15 84.7 67 65.7
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 6.7e-15 83.6 69 59.4
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.5e-14 82.4 67 59.7
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 3.3e-14 81.3 67 58.2
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 3.3e-14 81.3 68 61.8
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 4.4e-14 80.9 67 61.2
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 4.4e-14 80.9 67 58.2
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 5.7e-14 80.5 68 60.3
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 5.7e-14 80.5 67 55.2
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 9.7e-14 79.7 66 57.6
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 9.7e-14 79.7 58 67.2
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 9.7e-14 79.7 67 61.2
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 1.3e-13 79.3 67 58.2
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 1.3e-13 79.3 67 58.2
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.2e-13 78.6 67 61.2
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.7e-13 77.8 67 58.2
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.7e-13 77.8 67 58.2
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 3.7e-13 77.8 67 58.2
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.3e-13 77.0 67 59.7
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 6.3e-13 77.0 62 59.7
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 8.2e-13 76.6 70 57.1
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-12 75.9 67 56.7
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.4e-12 75.9 62 58.1
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 1.8e-12 75.5 68 54.4
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.8e-12 75.5 67 59.7
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 3.1e-12 74.7 67 53.7
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 5.3e-12 73.9 65 60.0
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 9.1e-12 73.2 62 61.3
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 1.2e-11 72.8 62 54.8
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.6e-11 72.4 57 61.4
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 2.0e-11 72.0 69 53.6
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 2.6e-11 71.6 65 53.8
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 4.5e-11 70.9 68 55.9
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 5.9e-11 70.5 62 53.2
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 7.7e-11 70.1 67 52.2
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 1.3e-10 69.3 68 54.4
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 1.3e-10 69.3 68 51.5
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.9e-10 68.2 64 56.2
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 3.8e-10 67.8 61 57.4
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 3.8e-10 67.8 61 57.4
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.8e-10 67.8 64 56.2
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 5.0e-10 67.4 65 53.8
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 5.0e-10 67.4 71 60.6
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 6.5e-10 67.0 70 54.3
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.1e-09 66.2 67 52.2
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 1.5e-09 65.9 70 51.4
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 2.5e-09 65.1 49 61.2
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 4.2e-09 64.3 62 50.0
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 7.2e-09 63.5 62 50.0
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 1.6e-08 62.4 69 53.6
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 2.1e-08 62.0 68 48.5
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 3.6e-08 61.2 62 48.4
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 3.0e-07 58.2 65 44.6
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 3.0e-07 58.2 61 45.9
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 1.5e-06 55.8 50 56.0
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 2.6e-06 55.1 71 38.0


User provided reference genes

Program Settings