Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 5.5e-95 350.9 171 100.0
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.0e-85 320.1 165 97.6
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 3.7e-83 311.6 165 93.3
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 8.3e-83 310.5 164 92.7
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.1e-82 310.1 165 93.3
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.4e-82 309.7 165 92.7
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.4e-82 309.7 165 92.7
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 1.8e-82 309.3 165 92.7
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.8e-82 309.3 163 93.3
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 7.0e-82 307.4 165 90.9
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 7.0e-82 307.4 165 92.1
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 7.0e-82 307.4 165 92.1
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 9.1e-82 307.0 165 91.5
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 9.1e-82 307.0 165 92.1
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 9.1e-82 307.0 165 92.1
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.2e-81 306.6 165 92.1
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.2e-81 306.6 165 92.1
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.6e-81 306.2 165 92.1
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.6e-81 306.2 165 91.5
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.6e-81 306.2 165 91.5
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 2.0e-81 305.8 163 91.4
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.7e-81 305.4 165 91.5
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.7e-81 305.4 165 91.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 2.7e-81 305.4 165 90.9
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.7e-81 305.4 165 90.3
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.5e-81 305.1 163 91.4
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.5e-81 305.1 163 91.4
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 3.5e-81 305.1 165 90.3
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 3.5e-81 305.1 165 90.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.5e-81 305.1 165 90.9
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.5e-81 305.1 165 90.9
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 3.5e-81 305.1 164 91.5
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 4.5e-81 304.7 165 90.9
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 5.9e-81 304.3 165 90.9
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 5.9e-81 304.3 165 90.3
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 7.7e-81 303.9 164 90.9
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 1.0e-80 303.5 165 90.3
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.0e-80 303.5 163 92.0
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 1.3e-80 303.1 165 91.5
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 1.3e-80 303.1 163 91.4
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.3e-80 303.1 163 92.0
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.7e-80 302.8 165 90.3
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 2.3e-80 302.4 163 91.4
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 2.3e-80 302.4 163 90.8
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.3e-80 302.4 163 90.8
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.3e-80 302.4 163 90.8
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.3e-80 302.4 165 90.9
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 5.0e-80 301.2 164 89.6
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 5.0e-80 301.2 165 90.9
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 8.6e-80 300.4 163 88.3
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 8.6e-80 300.4 165 89.7
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.1e-79 300.1 165 90.3
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 1.1e-79 300.1 165 89.7
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.1e-79 300.1 165 89.7
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.5e-79 299.7 165 89.1
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.9e-79 299.3 163 92.0
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.9e-79 299.3 162 90.7
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 2.5e-79 298.9 162 90.7
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 2.5e-79 298.9 163 90.2
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 3.3e-79 298.5 165 88.5
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 3.3e-79 298.5 165 88.5
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 4.2e-79 298.1 165 88.5
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 4.2e-79 298.1 165 89.7
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 4.2e-79 298.1 163 88.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 4.2e-79 298.1 163 90.2
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.2e-79 298.1 163 89.6
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 5.5e-79 297.7 165 88.5
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 7.2e-79 297.4 163 90.2
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 7.2e-79 297.4 163 90.2
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 7.2e-79 297.4 162 90.1
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 9.5e-79 297.0 163 89.0
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 9.5e-79 297.0 165 89.1
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 9.5e-79 297.0 165 89.1
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.2e-78 296.6 163 87.7
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 1.2e-78 296.6 165 89.1
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 1.2e-78 296.6 164 88.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.6e-78 296.2 168 88.1
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 1.6e-78 296.2 165 89.1
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.1e-78 295.8 165 88.5
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 2.1e-78 295.8 165 88.5
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 2.1e-78 295.8 165 88.5
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 2.1e-78 295.8 165 87.9
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 3.6e-78 295.0 165 88.5
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 3.6e-78 295.0 165 87.9
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 3.6e-78 295.0 165 88.5
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 3.6e-78 295.0 165 88.5
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 4.7e-78 294.7 163 88.3
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 4.7e-78 294.7 165 87.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 6.1e-78 294.3 163 89.6
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 6.1e-78 294.3 165 87.9
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 8.0e-78 293.9 165 86.7
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 8.0e-78 293.9 162 89.5
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.0e-77 293.5 163 87.7
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 1.0e-77 293.5 165 87.9
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-77 293.1 165 88.5
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-77 293.1 165 88.5
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 1.8e-77 292.7 165 87.9
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 2.3e-77 292.4 165 87.3
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 2.3e-77 292.4 165 87.9
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 2.3e-77 292.4 165 87.9
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 3.0e-77 292.0 165 87.9
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 3.0e-77 292.0 165 87.9
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 4.0e-77 291.6 165 87.3
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 4.0e-77 291.6 165 87.9
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 4.0e-77 291.6 163 87.7
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 4.0e-77 291.6 187 79.7
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 5.2e-77 291.2 165 87.9
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.0e-76 289.3 165 87.3
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 2.0e-76 289.3 165 86.7
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.6e-76 288.9 163 87.1
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.6e-76 288.9 165 86.1
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 2.6e-76 288.9 166 87.3
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.6e-76 288.9 171 84.2
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 4.4e-76 288.1 165 86.7
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 4.4e-76 288.1 166 86.7
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 9.8e-76 287.0 165 85.5
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.3e-75 286.6 166 86.7
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.3e-75 286.6 153 91.5
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.3e-75 286.6 165 86.1
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 2.2e-75 285.8 204 75.0
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.8e-75 285.4 165 86.1
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 4.1e-74 281.6 166 84.9
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 5.4e-74 281.2 166 85.5
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.2e-73 280.0 163 83.4
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 2.0e-73 279.3 166 84.3
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.0e-73 279.3 166 84.3
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 3.5e-73 278.5 166 84.3
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 5.0e-72 274.6 169 79.9
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.1e-71 273.5 169 80.5
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.1e-70 269.2 171 77.2
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 2.8e-70 268.9 164 81.1
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.4e-69 266.5 163 81.0
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 6.8e-69 264.2 169 77.5
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 3.4e-68 261.9 164 79.9
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 1.1e-66 256.9 252 59.1
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 3.9e-64 248.4 278 52.2
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 2.5e-63 245.7 298 50.0
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.3e-61 239.2 165 75.2
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 6.8e-61 237.7 131 89.3
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 3.6e-46 188.7 115 85.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.6e-41 173.3 97 88.7
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 2.1e-41 172.9 151 55.6
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.0e-40 170.6 163 60.1
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.5e-39 166.8 97 87.6
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 7.3e-39 164.5 163 57.1
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.1e-37 159.1 90 90.0
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.1e-37 159.1 90 90.0
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.1e-31 140.6 137 56.9
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 2.8e-30 136.0 153 46.4
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 6.2e-30 134.8 107 64.5
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 7.6e-28 127.9 162 43.2
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 2.9e-27 125.9 84 73.8
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 3.7e-22 109.0 56 94.6
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 4.0e-21 105.5 56 91.1
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 5.8e-20 101.7 100 49.0
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 1.3e-19 100.5 115 51.3
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 4.6e-17 92.0 120 45.0
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.3e-14 84.0 46 80.4
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 5.5e-10 68.6 38 78.9
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 7.1e-10 68.2 42 83.3
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-07 60.1 36 75.0
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 1.9e-07 60.1 36 75.0
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 5.7e-07 58.5 36 72.2


User provided reference genes

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