Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-132 475.3 242 100.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.0e-131 471.5 242 99.2
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.8e-131 470.3 242 98.8
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.2e-108 394.4 207 97.1
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-94 349.4 216 86.1
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.3e-81 307.0 209 77.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.1e-72 277.3 165 83.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.3e-69 265.8 207 69.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 9.6e-69 264.2 212 67.9
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.1e-67 259.2 177 74.6
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.1e-67 259.2 200 68.0
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.0e-67 258.8 209 69.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 9.0e-67 257.7 171 74.9
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.2e-66 257.3 203 67.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.5e-66 256.9 199 70.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.6e-66 256.1 205 69.3
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.6e-66 256.1 203 67.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 3.4e-66 255.8 175 74.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.4e-66 255.8 210 71.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 3.4e-66 255.8 208 70.7
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.6e-66 254.6 207 66.7
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.7e-65 253.4 152 82.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.2e-65 253.1 214 65.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.1e-64 250.8 208 68.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-64 250.8 206 67.0
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.4e-64 250.4 214 65.9
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.9e-64 250.0 196 68.9
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.9e-64 250.0 187 71.1
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.9e-64 250.0 196 67.9
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.5e-64 249.6 195 67.7
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.5e-64 249.6 208 64.9
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.2e-64 248.8 196 68.4
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.2e-64 248.8 208 64.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 7.1e-64 248.1 195 68.7
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 7.1e-64 248.1 186 70.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 9.3e-64 247.7 208 68.3
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.1e-63 246.5 210 65.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.7e-63 246.1 183 69.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 3.5e-63 245.7 202 67.8
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.5e-63 245.7 213 65.7
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 4.6e-63 245.4 209 64.6
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.0e-63 245.0 183 71.6
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 7.9e-63 244.6 198 68.2
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 7.9e-63 244.6 200 69.0
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 7.9e-63 244.6 209 65.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.0e-62 244.2 211 64.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-62 244.2 197 68.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.3e-62 243.8 196 68.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.3e-62 243.8 204 67.2
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.8e-62 243.4 200 65.5
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.3e-62 243.0 210 64.3
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.3e-62 243.0 184 69.6
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 2.3e-62 243.0 200 67.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-62 242.7 198 66.7
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.0e-62 242.7 196 67.9
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.0e-62 242.7 144 81.9
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.9e-62 242.3 193 67.9
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 3.9e-62 242.3 198 67.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.1e-62 241.9 197 67.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.1e-62 241.9 209 65.6
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 5.1e-62 241.9 184 69.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 5.1e-62 241.9 184 69.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 8.7e-62 241.1 211 65.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 8.7e-62 241.1 198 67.7
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 8.7e-62 241.1 206 64.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.5e-61 240.4 191 68.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.5e-61 240.4 188 67.6
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-61 240.0 192 65.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.5e-61 239.6 172 72.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.5e-61 239.6 209 64.6
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.3e-61 239.2 190 68.4
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 4.3e-61 238.8 214 62.6
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 7.4e-61 238.0 208 63.9
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.3e-60 237.3 202 62.4
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.3e-60 237.3 211 64.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.6e-60 236.9 177 70.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.1e-60 236.5 197 66.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.8e-60 236.1 147 80.3
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 8.2e-60 234.6 185 69.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.1e-59 234.2 203 63.5
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.1e-59 234.2 214 65.0
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-59 233.8 176 72.2
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.4e-59 233.8 211 61.6
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.1e-59 232.3 210 61.9
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.1e-59 232.3 186 68.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 5.3e-59 231.9 213 62.4
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 9.0e-59 231.1 184 66.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.2e-58 230.7 259 54.1
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.5e-58 230.3 207 60.9
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.5e-58 230.3 175 70.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-58 229.2 203 63.5
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 4.5e-58 228.8 180 68.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 4.5e-58 228.8 204 64.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.3e-57 227.3 203 63.1
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-57 227.3 203 63.1
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-57 227.3 203 63.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-57 226.9 203 63.1
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.9e-57 226.1 202 64.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.4e-56 223.8 179 68.2
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 7.2e-56 221.5 185 63.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-55 219.9 207 61.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.5e-55 219.2 198 63.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 4.6e-55 218.8 211 60.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 5.1e-54 215.3 146 74.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 8.7e-54 214.5 183 64.5
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 9.7e-53 211.1 146 73.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.0e-50 203.4 212 57.5
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.9e-50 201.8 194 56.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-49 200.7 112 86.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.2e-49 199.9 199 57.8
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 3.8e-49 199.1 157 65.6
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.1e-48 197.6 144 70.8
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 6.1e-47 191.8 121 78.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.4e-46 190.7 159 62.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.0e-46 189.5 284 44.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.5e-45 187.2 230 53.5
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.3e-45 186.0 178 56.2
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.3e-45 186.0 147 66.7
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-43 181.0 109 77.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.2e-42 177.6 144 63.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 5.9e-42 175.3 146 61.0
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.7e-41 173.7 137 65.7
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-40 171.0 197 49.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-40 171.0 197 49.7
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.5e-40 169.9 91 92.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 7.9e-39 164.9 118 69.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.8e-38 163.7 111 73.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.2e-34 151.0 184 48.4
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 5.9e-34 148.7 210 47.1
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.0e-33 147.9 188 46.8
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.8e-33 146.0 84 83.3
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 6.5e-33 145.2 160 50.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.1e-31 140.2 128 56.2
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.0e-30 136.3 97 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 5.2e-30 135.6 123 54.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 5.2e-30 135.6 185 44.3
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.6e-29 133.3 142 58.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 8.2e-28 128.3 70 88.6
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-26 124.4 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-26 124.4 67 89.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.6e-23 114.0 83 69.9
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 8.3e-20 101.7 86 61.6
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 9.1e-19 98.2 128 44.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.5e-18 96.3 70 70.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 8.8e-14 81.6 50 76.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 4.7e-07 59.3 117 42.7
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.0e-06 58.2 38 73.7


User provided reference genes

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