Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.6e-253 878.2 450 100.0
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 8.2e-122 441.4 485 56.3
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-115 420.6 605 47.3
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-115 420.6 605 47.3
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.4e-100 370.9 300 68.7
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 5.0e-95 352.4 533 46.2
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.4e-89 333.6 426 51.2
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 3.0e-84 316.6 312 58.3
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.8e-82 310.1 460 47.0
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.7e-79 300.8 459 44.9
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 4.0e-76 289.7 433 43.2
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 5.2e-76 289.3 301 58.1
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 5.2e-76 289.3 421 43.2
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.2e-75 288.1 462 44.8
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.6e-75 287.0 411 44.5
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 3.4e-75 286.6 480 44.2
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.7e-75 285.8 470 42.8
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 5.7e-75 285.8 463 44.3
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 7.5e-75 285.4 470 44.5
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 9.8e-75 285.0 397 48.1
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 3.7e-74 283.1 347 48.4
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.4e-73 281.2 512 42.0
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 1.8e-73 280.8 327 53.2
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.2e-73 280.0 298 54.7
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.2e-73 280.0 309 52.8
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 4.1e-73 279.6 438 43.6
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 5.4e-73 279.3 297 55.9
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.2e-72 278.1 511 41.7
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 2.7e-72 276.9 473 43.3
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 2.7e-72 276.9 495 41.8
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 1.7e-71 274.2 448 44.0
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.9e-70 270.8 298 53.7
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.9e-70 270.8 375 48.5
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.8e-69 266.9 462 42.6
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 3.6e-69 266.5 285 56.8
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.0e-68 265.0 466 42.1
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 3.1e-68 263.5 297 51.2
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 8.9e-68 261.9 476 41.4
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.5e-67 261.2 482 41.3
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.0e-67 260.8 461 41.6
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.4e-67 260.0 473 41.2
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.4e-67 260.0 461 41.6
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 4.4e-67 259.6 513 39.8
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.7e-66 257.7 513 39.8
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 2.2e-66 257.3 407 41.5
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.9e-66 256.9 474 40.5
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 2.9e-66 256.9 493 40.4
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 4.9e-66 256.1 330 50.0
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.9e-66 256.1 459 41.6
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 6.4e-66 255.8 460 39.6
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 2.4e-65 253.8 283 52.7
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.4e-65 252.7 467 40.0
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 7.0e-65 252.3 292 51.7
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.6e-64 251.1 356 45.5
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.6e-64 251.1 296 50.7
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 1.0e-63 248.4 502 36.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.3e-63 248.1 299 51.8
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.0e-63 246.1 406 41.1
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 5.0e-63 246.1 357 44.8
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.1e-62 245.0 358 45.8
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.9e-62 244.2 474 40.3
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.3e-62 243.4 466 40.3
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.1e-61 240.7 338 46.4
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 2.8e-61 240.4 305 46.2
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 6.2e-61 239.2 323 45.2
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.1e-60 238.4 463 39.1
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.4e-60 238.0 432 41.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 5.2e-60 236.1 309 46.3
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 5.2e-60 236.1 375 41.9
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.2e-59 235.0 309 46.9
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.2e-59 235.0 309 46.9
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.6e-59 233.8 394 43.1
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 3.7e-58 229.9 300 45.3
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 6.4e-58 229.2 379 42.5
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 6.4e-58 229.2 252 53.6
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 2.4e-57 227.3 293 50.2
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 3.2e-57 226.9 387 41.9
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 9.2e-57 225.3 305 49.5
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 7.8e-56 222.2 376 41.8
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 3.9e-55 219.9 451 39.2
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 1.1e-54 218.4 457 38.9
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.5e-54 218.0 310 47.4
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 5.6e-54 216.1 458 38.0
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 5.6e-54 216.1 462 39.0
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.6e-53 213.4 301 44.2
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 4.7e-53 213.0 330 43.0
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 6.2e-53 212.6 298 47.0
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 2.6e-51 207.2 332 41.9
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.9e-51 205.3 397 40.1
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.1e-49 201.8 460 36.7
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 1.9e-49 201.1 484 35.1
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 2.4e-49 200.7 295 42.7
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.4e-49 200.7 391 37.6
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 7.1e-49 199.1 448 35.9
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 9.2e-49 198.7 299 45.2
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 2.1e-48 197.6 309 43.4
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 5.1e-47 193.0 451 35.3
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 8.6e-47 192.2 199 55.3
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 9.6e-46 188.7 529 33.8
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.1e-44 185.3 257 46.3
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 2.4e-44 184.1 251 49.4
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 1.5e-43 181.4 315 41.3
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 4.9e-42 176.4 471 34.8
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 8.4e-42 175.6 299 42.8
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.4e-41 174.9 294 41.8
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.4e-41 174.1 299 42.5
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 3.2e-41 173.7 369 36.9
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.9e-38 164.5 309 39.8
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 9.6e-38 162.2 447 35.6
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 9.6e-38 162.2 447 35.6
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 6.2e-37 159.5 331 38.7
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 5.3e-36 156.4 390 35.4
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 4.4e-35 153.3 308 39.9
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 4.4e-35 153.3 308 39.9
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 8.4e-34 149.1 289 38.1
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 4.6e-32 143.3 287 34.8
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 2.8e-29 134.0 275 39.6
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 2.4e-28 131.0 226 40.7
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.2e-27 128.6 323 33.4
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.3e-23 115.2 283 33.2
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.8e-23 114.8 247 34.8
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.5e-19 101.7 136 41.2
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 7.6e-19 99.4 267 33.7
Actinidia36381 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.1e-17 95.5 82 67.1
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.8e-15 88.2 318 28.0
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 6.7e-15 86.3 93 57.0
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.6e-13 81.6 273 29.7
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.1e-13 81.3 103 49.5
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 5.3e-12 76.6 279 26.5
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.8e-10 70.5 172 34.3
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.1e-09 68.9 63 50.8
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 1.0e-07 62.4 61 54.1
Cre14.g624600 Chlamydomonas reinhardtii HOM05D005322 ORTHO05D006746 1.9e-06 58.2 79 40.5
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 1.9e-06 58.2 45 62.2


User provided reference genes

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