Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 0.0e+00 1354.0 698 100.0
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 0.0e+00 1351.7 698 99.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.4e-290 1002.7 700 74.7
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.1e-282 973.8 700 75.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 5.1e-256 887.9 710 68.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.7e-241 839.0 703 66.6
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.0e-224 783.9 704 61.5
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.6e-223 779.2 729 62.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 9.5e-210 734.2 706 56.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.4e-205 719.5 707 57.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.3e-200 703.0 704 54.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.2e-193 680.6 704 52.6
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 4.4e-191 672.2 722 52.6
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.1e-189 665.6 680 55.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 4.3e-186 655.6 705 50.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.6e-185 652.5 698 52.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.2e-185 651.7 714 50.7
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.5e-183 647.1 702 51.3
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 9.2e-181 637.9 714 51.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 3.5e-180 636.0 708 51.3
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.9e-179 632.5 715 50.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 5.6e-178 628.6 707 50.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 9.6e-178 627.9 706 51.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 5.8e-175 618.6 707 50.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.9e-174 616.3 716 49.9
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.3e-171 607.4 719 50.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.7e-171 604.7 715 48.7
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 8.7e-171 604.7 715 48.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.3e-170 601.7 720 48.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.3e-169 600.9 720 47.5
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.8e-169 599.7 733 48.3
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 5.8e-167 592.0 701 48.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 3.8e-166 589.3 698 49.4
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.9e-165 587.0 722 47.1
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.9e-165 587.0 701 48.1
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.2e-165 585.9 714 47.8
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 5.1e-163 578.9 686 50.0
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 6.6e-163 578.6 720 47.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 2.8e-161 573.2 713 48.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.8e-161 573.2 699 47.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 8.1e-161 571.6 729 48.1
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.0e-160 569.3 781 46.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.4e-157 560.8 709 47.7
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 4.2e-157 559.3 705 47.7
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.9e-156 555.1 724 47.2
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.3e-155 553.5 695 46.0
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-154 550.8 711 46.4
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-152 544.7 722 46.3
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 4.5e-151 539.3 700 47.6
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 5.8e-151 538.9 707 45.7
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.7e-150 537.3 734 46.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.8e-150 536.2 700 45.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.2e-149 532.7 744 45.4
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.2e-148 531.2 740 44.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 2.7e-148 530.0 702 45.7
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.8e-147 527.3 717 44.2
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.3e-147 526.9 707 44.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.7e-147 525.0 636 47.3
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.7e-146 522.3 698 45.7
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 7.4e-146 521.9 711 44.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.1e-145 520.4 699 45.2
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 2.8e-145 520.0 714 44.3
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 5.3e-144 515.8 701 44.9
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.0e-142 511.5 547 51.9
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 6.5e-142 508.8 639 47.4
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.9e-141 507.3 706 44.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.6e-140 504.2 703 45.0
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.6e-140 502.7 698 44.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.0e-139 501.5 721 43.6
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.0e-139 501.5 581 50.1
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.0e-135 487.3 714 42.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-133 481.5 704 47.4
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.5e-133 480.3 718 43.0
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.5e-133 480.3 730 42.9
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.5e-133 480.3 718 43.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.5e-133 479.2 713 42.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.6e-132 476.5 722 42.7
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.0e-131 473.4 716 42.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.0e-130 470.7 718 42.3
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.8e-129 466.8 680 44.7
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 4.8e-129 466.1 722 41.6
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.4e-128 464.5 699 43.1
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 9.1e-128 461.8 683 42.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-127 461.5 706 42.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.2e-126 457.2 660 44.7
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.2e-125 453.0 714 39.8
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 4.2e-125 453.0 653 42.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-124 451.4 477 53.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.1e-124 450.7 710 39.9
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.0e-123 448.4 708 40.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 4.2e-117 426.4 713 39.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.8e-115 421.0 574 46.3
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.0e-115 419.9 710 39.7
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 8.2e-113 412.1 717 39.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.8e-110 403.3 661 41.9
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.1e-104 385.2 505 45.7
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.4e-104 384.8 602 40.5
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.8e-104 384.4 482 49.6
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.0e-98 364.4 753 36.5
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 2.2e-97 360.9 475 45.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.1e-96 357.1 371 50.9
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 4.1e-96 356.7 516 42.2
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-94 352.1 696 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 7.3e-93 345.9 711 34.6
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 4.7e-92 343.2 669 35.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.9e-89 334.0 460 43.0
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.1e-88 332.0 513 42.1
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.9e-87 326.2 621 35.6
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-86 325.1 412 47.6
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.9e-86 323.6 770 33.5
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.1e-84 317.8 635 36.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.2e-84 316.2 513 39.0
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 4.0e-83 313.5 668 34.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 2.0e-82 311.2 562 38.4
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 5.8e-82 309.7 483 41.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-80 305.4 669 33.3
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-80 305.4 669 33.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.9e-72 278.1 518 36.9
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.6e-70 269.2 320 46.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.7e-68 263.5 618 34.1
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.0e-62 245.7 483 36.2
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.4e-56 225.3 435 35.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 8.4e-49 199.5 251 48.6
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-46 191.8 382 33.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.9e-46 190.7 215 47.9
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-45 189.1 407 34.4
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.5e-45 188.7 375 35.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.3e-41 175.6 200 44.0
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.9e-41 174.5 335 39.4
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.9e-40 171.8 330 38.2
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 6.0e-39 166.8 221 44.8
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.3e-37 161.0 238 42.0
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 5.6e-37 160.2 358 35.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 8.1e-36 156.4 331 35.3
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 6.9e-35 153.3 130 60.0
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-33 148.3 437 33.9
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.5e-33 146.7 193 46.1
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.1e-32 146.0 231 44.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-32 146.0 267 41.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.5e-32 144.8 239 38.9
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.3e-29 134.4 275 37.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.3e-29 134.4 261 34.9
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-26 125.9 331 32.6
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.5e-25 119.8 156 41.7
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.5e-21 108.2 632 24.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.3e-20 105.9 140 42.9
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.4e-19 101.7 650 26.0
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.9e-17 94.7 227 33.5
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.5e-17 93.6 100 51.0
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.1e-16 92.8 129 43.4
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.2e-16 90.1 82 51.2
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.0e-14 84.7 103 42.7
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.6e-13 81.6 158 38.0
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 4.4e-13 80.9 87 48.3
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.4e-13 80.9 138 39.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.4e-13 80.1 106 44.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.4e-13 80.1 52 69.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.4e-13 80.1 101 47.5
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.4e-11 75.1 149 35.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.6e-10 71.6 80 46.2
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 4.5e-10 70.9 81 48.1
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 5.0e-09 67.4 190 32.1
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 5.2e-06 57.4 139 29.5
MBI08_g04811_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 6.7e-06 57.0 154 32.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.8e-06 56.6 31 71.0


User provided reference genes

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