Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.9e-44 181.4 86 100.0
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-20 102.8 55 85.5
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-19 98.2 64 71.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 7.2e-19 97.1 52 90.4
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.6e-16 88.6 45 91.1
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 4.4e-16 87.8 50 84.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.4e-16 87.8 43 93.0
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 5.7e-16 87.4 43 93.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.7e-16 87.4 43 93.0
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.5e-16 87.0 43 95.3
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 7.5e-16 87.0 43 93.0
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 9.8e-16 86.7 47 85.1
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 9.8e-16 86.7 47 85.1
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.3e-15 86.3 43 93.0
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.3e-15 86.3 43 93.0
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.3e-15 86.3 43 93.0
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.7e-15 85.9 43 93.0
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.7e-15 85.9 43 93.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 2.2e-15 85.5 43 90.7
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.2e-15 85.5 50 78.0
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.2e-15 85.5 43 90.7
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.2e-15 85.5 43 90.7
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 2.2e-15 85.5 43 90.7
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.2e-15 85.5 43 90.7
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.2e-15 85.5 43 90.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.8e-15 85.1 43 88.4
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.8e-15 85.1 43 88.4
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 3.7e-15 84.7 43 88.4
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 6.3e-15 84.0 48 79.2
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 6.3e-15 84.0 43 90.7
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.3e-15 84.0 47 83.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 8.3e-15 83.6 48 83.3
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 8.3e-15 83.6 48 83.3
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 8.3e-15 83.6 48 83.3
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.1e-14 83.2 42 90.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.1e-14 83.2 43 88.4
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.4e-14 82.8 43 88.4
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.4e-14 82.8 43 88.4
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.4e-14 82.8 42 90.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.8e-14 82.4 44 86.4
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.8e-14 82.4 43 86.0
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.8e-14 82.4 42 90.5
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 2.4e-14 82.0 47 83.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.4e-14 82.0 48 83.3
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.1e-14 81.6 43 86.0
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 3.1e-14 81.6 44 84.1
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 3.1e-14 81.6 42 85.7
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 3.1e-14 81.6 43 83.7
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 4.1e-14 81.3 42 88.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 4.1e-14 81.3 42 88.1
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.1e-14 81.3 42 88.1
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 4.1e-14 81.3 42 90.5
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.1e-14 81.3 42 88.1
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 5.4e-14 80.9 43 86.0
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 5.4e-14 80.9 55 74.5
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 7.0e-14 80.5 43 83.7
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 7.0e-14 80.5 43 86.0
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 7.0e-14 80.5 42 85.7
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 9.1e-14 80.1 43 83.7
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 9.1e-14 80.1 43 88.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 9.1e-14 80.1 42 88.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.2e-13 79.7 42 83.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.2e-13 79.7 43 86.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.6e-13 79.3 42 83.3
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.0e-13 79.0 42 85.7
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.7e-13 78.6 48 79.2
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.7e-13 78.6 48 79.2
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.5e-13 78.2 45 82.2
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.5e-13 78.2 42 88.1
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 3.5e-13 78.2 47 74.5
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 4.5e-13 77.8 48 75.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 5.9e-13 77.4 42 83.3
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 7.7e-13 77.0 47 76.6
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 7.7e-13 77.0 47 76.6
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.0e-12 76.6 42 83.3
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.0e-12 76.6 42 81.0
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.3e-12 76.3 45 77.8
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.3e-12 75.5 65 61.5
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.3e-12 75.5 42 83.3
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 2.9e-12 75.1 42 83.3
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 2.9e-12 75.1 42 83.3
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.9e-12 75.1 42 83.3
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 2.9e-12 75.1 69 56.5
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.9e-12 75.1 42 83.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.0e-12 74.3 43 79.1
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 6.6e-12 73.9 48 72.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 8.6e-12 73.6 47 70.2
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 8.6e-12 73.6 42 83.3
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 8.6e-12 73.6 42 81.0
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.1e-11 73.2 42 81.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.1e-11 73.2 38 89.5
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.1e-11 73.2 42 78.6
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.5e-11 72.8 42 81.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.5e-11 72.8 51 68.6
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 3.3e-11 71.6 42 81.0
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 3.3e-11 71.6 42 81.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-11 71.6 42 81.0
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 3.3e-11 71.6 42 81.0
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 3.3e-11 71.6 38 89.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.3e-11 71.6 41 78.0
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 4.2e-11 71.2 75 53.3
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 5.5e-11 70.9 43 79.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 5.5e-11 70.9 51 56.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 7.2e-11 70.5 42 78.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 7.2e-11 70.5 47 74.5
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 9.5e-11 70.1 41 78.0
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 9.5e-11 70.1 41 70.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.6e-10 69.3 42 81.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.6e-10 69.3 42 81.0
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.6e-10 69.3 41 68.3
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.1e-10 68.9 42 78.6
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 2.8e-10 68.6 47 70.2
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.7e-10 67.8 42 76.2
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.7e-10 67.8 42 76.2
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.7e-10 67.8 42 76.2
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.4e-09 66.2 37 81.1
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.8e-09 65.9 40 82.5
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.8e-09 65.9 38 78.9
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.8e-09 65.9 41 65.9
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 2.3e-09 65.5 40 65.0
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 4.0e-09 64.7 45 64.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 5.7e-08 60.8 42 64.3
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-07 59.7 33 81.8
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.8e-07 58.5 42 64.3
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.9e-07 57.8 54 50.0
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.8e-06 55.8 42 57.1


User provided reference genes

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