Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-37 159.5 77 100.0
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-37 159.5 77 100.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.6e-28 128.3 67 91.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 7.6e-28 126.7 67 89.6
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 7.6e-28 126.7 67 89.6
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.0e-27 126.3 67 89.6
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.3e-27 125.9 67 89.6
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.3e-27 125.9 67 89.6
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.3e-27 125.9 67 89.6
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.3e-27 125.9 67 89.6
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-27 125.9 67 89.6
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-27 125.9 67 89.6
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-27 125.6 67 89.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-27 125.6 67 89.6
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-27 125.6 67 89.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-27 125.6 67 89.6
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.7e-27 125.6 67 89.6
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.2e-27 125.2 67 88.1
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.2e-27 125.2 67 88.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.9e-27 124.8 67 88.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.9e-27 124.8 67 88.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.9e-27 124.8 67 88.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.9e-27 124.8 67 88.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 3.8e-27 124.4 67 88.1
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.9e-27 124.0 67 86.6
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.9e-27 124.0 67 88.1
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.9e-27 124.0 67 86.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.9e-27 124.0 67 88.1
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.9e-27 124.0 67 88.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 4.9e-27 124.0 67 86.6
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 88.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.5e-27 123.6 67 86.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.4e-27 123.2 67 88.1
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 8.4e-27 123.2 67 88.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 8.4e-27 123.2 67 85.1
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 8.4e-27 123.2 67 86.6
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 8.4e-27 123.2 67 86.6
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 8.4e-27 123.2 67 86.6
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.1e-26 122.9 67 86.6
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.1e-26 122.9 67 86.6
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.4e-26 122.5 67 86.6
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.4e-26 122.5 67 88.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.9e-26 122.1 67 85.1
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.9e-26 122.1 67 85.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.9e-26 122.1 67 86.6
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.9e-26 122.1 67 86.6
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.9e-26 122.1 67 85.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.5e-26 121.7 67 85.1
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.5e-26 121.7 67 86.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.5e-26 121.7 67 85.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.2e-26 121.3 67 85.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.2e-26 121.3 67 85.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 3.2e-26 121.3 67 86.6
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.2e-26 121.3 67 85.1
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 4.2e-26 120.9 67 83.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 4.2e-26 120.9 67 85.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 4.2e-26 120.9 67 85.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.5e-26 120.6 67 83.6
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 5.5e-26 120.6 67 83.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 5.5e-26 120.6 67 83.6
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 5.5e-26 120.6 67 83.6
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.1e-26 120.2 67 82.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 7.1e-26 120.2 67 82.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 7.1e-26 120.2 67 83.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 9.3e-26 119.8 67 80.6
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 9.3e-26 119.8 67 83.6
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.3e-26 119.8 67 83.6
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 9.3e-26 119.8 67 85.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 9.3e-26 119.8 67 85.1
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 9.3e-26 119.8 67 83.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.2e-25 119.4 67 83.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.2e-25 119.4 67 82.1
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.1e-25 118.6 67 82.1
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.7e-25 118.2 67 82.1
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.7e-25 118.2 67 83.6
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.5e-25 117.9 67 80.6
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 3.5e-25 117.9 67 85.1
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.5e-25 117.9 67 85.1
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.5e-25 117.9 67 79.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.3e-24 115.9 67 82.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.8e-24 115.5 66 83.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 3.9e-24 114.4 67 79.1
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.5e-23 111.7 60 85.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.5e-23 111.7 67 77.6
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.5e-23 111.7 66 78.8
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 5.7e-23 110.5 67 74.6
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.6e-22 109.0 67 73.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.6e-22 109.0 67 73.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.8e-22 107.5 67 73.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.1e-21 104.4 67 71.6
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.1e-21 104.4 67 71.6
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.4e-20 101.3 67 65.7
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.3e-19 99.4 61 78.7
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.0e-19 97.4 67 65.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.5e-19 97.1 67 73.1
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 8.5e-19 96.7 68 69.1
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.1e-18 96.3 67 64.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.9e-18 95.5 67 64.2
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.9e-18 95.5 68 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.5e-18 95.1 67 62.7
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 4.2e-18 94.4 68 64.7
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 7.2e-18 93.6 120 46.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.6e-17 92.4 67 59.7
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.6e-17 92.4 46 91.3
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.6e-17 92.4 67 62.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 6.1e-17 90.5 45 88.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 7.9e-17 90.1 46 87.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-15 86.3 56 75.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 7.4e-15 83.6 47 76.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 8.2e-14 80.1 45 80.0
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 5.0e-11 70.9 82 50.0
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 5.7e-07 57.4 38 68.4


User provided reference genes

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